Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04242 ATGGAGCTTAGCTTTAAGCACCAACTTGGACTTTTTTGTGTTATACTGCTTTTTCCTGCAATGTGTCACTGCCAGGAATATTATACTAAATCCAGAGCAACCTTTTATAGTACCTCTGATGGCTATGGGACTCCAACGGGAGCTTGTGGATTTGGGGAATATGGAAGGAAGATGAATTGGTATGATGGAAGAGTCGCAGGGGTCTCTGGGCTATGGAGGAATGGAGTTGGCTGTGGTACATGCTATCAGGTGAAGTGCCTAATAGAAAACTTATGCGATGAGAATGGAGCATACTTGGTGGCAACAGATCAGGGTTATGGAGACAACACAGACTTCATCATGAGCCCACGGGCCTTCTTAAAACTGGGACGTGATCAAAGTGCTTATGAAGAGCTTAAGAAATACGGTACAGTGGATATTGAATACAAAAGGGTTCCATGTACCTACACTGGCAACGTCTTGTTCTATATCAAGGAAACTAGCAGCAACCCTGGTTACTTTGCTTTGGTCATTCTCAATGTAAATGGAATAAACGACGTCACTGATGTTGAAATCTGGCAGGCTGGAGAGTGGAAGGCACTTAACAGGAACTATGGAGCAGTGTTTGACTTTCCCAACCCTCCCAGTGGCGACATCCGGTTGAGGTTTAGAGTGAGTGGCATGTCTGATTGGGTGGACCCCAAGATTGTGATACCTAGTAACTGGAAGCCTGGAAACACCTATGTCACCGAGGTTCAGCTTAAATAG 747 0.4498 MELSFKHQLGLFCVILLFPAMCHCQEYYTKSRATFYSTSDGYGTPTGACGFGEYGRKMNWYDGRVAGVSGLWRNGVGCGTCYQVKCLIENLCDENGAYLVATDQGYGDNTDFIMSPRAFLKLGRDQSAYEELKKYGTVDIEYKRVPCTYTGNVLFYIKETSSNPGYFALVILNVNGINDVTDVEIWQAGEWKALNRNYGAVFDFPNPPSGDIRLRFRVSGMSDWVDPKIVIPSNWKPGNTYVTEVQLK 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04242 248 PANTHER EXPANSIN-B3 17 246 - -
Spst3g04242 248 Pfam Expansin C-terminal domain 155 232 IPR007117 -
Spst3g04242 248 Gene3D - 148 243 IPR036749 -
Spst3g04242 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 243 IPR007117 -
Spst3g04242 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 152 IPR007112 -
Spst3g04242 248 Gene3D - 20 147 IPR036908 -
Spst3g04242 248 SUPERFAMILY Barwin-like endoglucanases 14 152 IPR036908 -
Spst3g04242 248 Pfam Lytic transglycolase 65 142 IPR009009 -
Spst3g04242 248 SUPERFAMILY PHL pollen allergen 153 242 IPR036749 -
Spst3g04242 248 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Spst3g04242 248 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Spst3g04242 248 PRINTS Expansin/Lol pI family signature 135 151 IPR007118 GO:0005576
Spst3g04242 248 PRINTS Expansin/Lol pI family signature 229 243 IPR007118 GO:0005576
Spst3g04242 248 PRINTS Expansin/Lol pI family signature 191 205 IPR007118 GO:0005576
Spst3g04242 248 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04242 Spst-Chr3 93924628 93926066 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04242 1 247 Expansin Gene Family AT4G17030 43.874 3.21e-70 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04242 - - gmx:100777265 464.151