Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04241 ATGACCCCATATCTTCGCTTCCTATCTCATAAACCATTCTATCCTCAATACTCTTTCCTGTTTCATATACTTCACTGCATTCATCATTTAGATATGGAACTTAGCCTTAAGCACCAACTTGGCCTTGCTTGTGTCACACTACTTTTACCTGCACTCTGTATATCACAGGACACTTTTACGTGCTCCAGAGCAACATATTATGGTAGCCCTGATTGCTATGGGAATCCAAAGGGAGCTTGTGGCTTTGGCGAATATGGAAGAACGGTGAATGATGGAAGTGTGGCAGGGTCAAGGCTATGGAGGAATGGAAGCGGCTGTGGTGCATGCTATCAGGCTAGGTGCAAGATACCGCAATATTGCGATGAAAATGGAGCATTCGTGGTGGTGACAGACTATGGTGAGGGAGACAGAACAGACTTCATCATGAGCCCGCGCGCTTACTCGAGATTGGGACGCAACGCAGATGCATCTGCAGAGTTGTTCAAATATGGTGTAGTGGATATTGAATACAGAAGAGTCCCATGTAGTTACACTGGCTACAATGTCGTGTTTAAGGTACATGAACACAGCAGAAACCCTGACTACTTTGCTGTCGTGGTTCTCTATGTAGATGGAACTTACGATGTCACTGCTGTTGAGTTGTTTCAGCAAGACTGCCAAGAATGGAAGCCATTGCGCAGGGCCTTTGGGGCAATGTTTGACTATAGCAACCCACCAAGTGGTGAAATGTACCTGAGGTTCCAAGTTAGTGGCAGTGCAGGGATTTATTGGGTTCAGTCAAGGAATGCTATCTCTAGTGATTGGAGGGCCGGAGCAACATATGACACCATGGTGCAGCTTAATTAG 846 0.4598 MTPYLRFLSHKPFYPQYSFLFHILHCIHHLDMELSLKHQLGLACVTLLLPALCISQDTFTCSRATYYGSPDCYGNPKGACGFGEYGRTVNDGSVAGSRLWRNGSGCGACYQARCKIPQYCDENGAFVVVTDYGEGDRTDFIMSPRAYSRLGRNADASAELFKYGVVDIEYRRVPCSYTGYNVVFKVHEHSRNPDYFAVVVLYVDGTYDVTAVELFQQDCQEWKPLRRAFGAMFDYSNPPSGEMYLRFQVSGSAGIYWVQSRNAISSDWRAGATYDTMVQLN 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04241 281 PRINTS Expansin/Lol pI family signature 58 73 IPR007118 GO:0005576
Spst3g04241 281 PRINTS Expansin/Lol pI family signature 222 236 IPR007118 GO:0005576
Spst3g04241 281 PRINTS Expansin/Lol pI family signature 262 276 IPR007118 GO:0005576
Spst3g04241 281 PRINTS Expansin/Lol pI family signature 163 179 IPR007118 GO:0005576
Spst3g04241 281 PRINTS Expansin/Lol pI family signature 96 114 IPR007118 GO:0005576
Spst3g04241 281 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 194 276 IPR007117 -
Spst3g04241 281 SUPERFAMILY Barwin-like endoglucanases 45 179 IPR036908 -
Spst3g04241 281 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 77 180 IPR007112 -
Spst3g04241 281 Gene3D - 51 175 IPR036908 -
Spst3g04241 281 PANTHER EXPANSIN-B3 47 279 - -
Spst3g04241 281 Pfam Lytic transglycolase 97 170 IPR009009 -
Spst3g04241 281 Pfam Expansin C-terminal domain 182 264 IPR007117 -
Spst3g04241 281 CDD DPBB_EXLB_N 62 175 - -
Spst3g04241 281 Gene3D - 176 277 IPR036749 -
Spst3g04241 281 SUPERFAMILY PHL pollen allergen 181 275 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04241 Spst-Chr3 93917465 93918967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04241 45 280 Expansin Gene Family AT4G17030 59.244 1.96e-106 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04241 - - gmx:100779487 500.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04241 3 93917465 93918967 Spst3g04241 3 93917465 93918967 PCT