Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04197 ATGATTACAAATGGCACGCTGGGTCCAATGCCTCTAAATGGTTTCCATGGCATAGCTGATGTGGTTCAAGGGACTTTCCATCGTGGCAGTCTTTATCAGCACCACACCCTTGCCCACACCACAAGGAATCCCCACTGCATATTCTTCCATTCTCTCCTTCACATGGCTCTTTCTCTTCTGTTTCCTCTTCTTGCCACCTTTCTTTTCATGCAAACTCTGGCAGATACTTCCTTTATACAATCTCGTGCAGCATATTACCCAAACTCTGAAGAAAACGGCACAGACGTTGGTGCATGTGAATTTGGTTCTTTTGGTGCCACCGTTAATGGTGGGGATGTATCAGCTGCATCTAATCTTTATCGAAATGGTGTTGGCTGTGGTGCCTGTTATCAGGTGAGATGTAGCAATAGTGCTTATTGCTCAGGAAACGGTGTCACAATAGTAATAACTGACCAAGGCTCAAGTGCTAACACTGACTTCATTCTTAGCCAACGAGCTTTTGGTGGGATGGCTATCAATAAGGACGCTGCTGCTTCTCTATTAGCTCTTGGCATAGTTGATATTCAATATAGACGGGTTTCATGCAGCTACCCAAACAAAAACATTACAGTTAAGATACATGAGAGCAGCAACAACCCTCACTATTTGGCTTTTGTCTTATGGTTTCAACAGGGAAGTAGAGACATAACTGCTGTGCAACTTTGTGAGACTCAGAACTTTGTGTGCAAGTTACTGGATCGGAGTCATGGTGCAGTTTGGACCACTACCGCTCCACCGAGTGGACCTTTGGCTTTGAGAATGTTGTTTAGTGCTGAAGAAGAGGGAGATGAATCGTGGGTCGTTCCAGTTAATAACATTCCACAAGACTGGAAGGCAGGAGAAACGTACGACTTAGGGGTACAAGTGGACCAATAG 915 0.4481 MITNGTLGPMPLNGFHGIADVVQGTFHRGSLYQHHTLAHTTRNPHCIFFHSLLHMALSLLFPLLATFLFMQTLADTSFIQSRAAYYPNSEENGTDVGACEFGSFGATVNGGDVSAASNLYRNGVGCGACYQVRCSNSAYCSGNGVTIVITDQGSSANTDFILSQRAFGGMAINKDAAASLLALGIVDIQYRRVSCSYPNKNITVKIHESSNNPHYLAFVLWFQQGSRDITAVQLCETQNFVCKLLDRSHGAVWTTTAPPSGPLALRMLFSAEEEGDESWVVPVNNIPQDWKAGETYDLGVQVDQ 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04197 304 Pfam Expansin C-terminal domain 202 273 IPR007117 -
Spst3g04197 304 SUPERFAMILY PHL pollen allergen 200 297 IPR036749 -
Spst3g04197 304 Gene3D - 66 196 IPR036908 -
Spst3g04197 304 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 214 298 IPR007117 -
Spst3g04197 304 SUPERFAMILY Barwin-like endoglucanases 66 199 IPR036908 -
Spst3g04197 304 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 96 200 IPR007112 -
Spst3g04197 304 Gene3D - 197 302 IPR036749 -
Spst3g04197 304 PRINTS Expansin/Lol pI family signature 284 298 IPR007118 GO:0005576
Spst3g04197 304 PRINTS Expansin/Lol pI family signature 183 199 IPR007118 GO:0005576
Spst3g04197 304 PRINTS Expansin/Lol pI family signature 95 113 IPR007118 GO:0005576
Spst3g04197 304 Pfam Lytic transglycolase 116 190 IPR009009 -
Spst3g04197 304 PANTHER EXPANSIN-B3 61 301 - -
Spst3g04197 304 CDD DPBB_EXLB_N 79 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04197 Spst-Chr3 93397987 93401809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04197 56 297 Expansin Gene Family AT4G17030 41.152 1.81e-56 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04197 - - gmx:100812555 468.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04197 3 93397987 93401809 Spst3g04197 3 93397987 93401809 PCT