Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst3g04190 | ATGGTAGCTGAGTTTTCCTTTTCTGGTTTTCACGAGATCTTAATTACTGGGATGATATTTGTCTGTTTGCTGTTCTGTGAACGTGGAATCAGCAATGAGATCTTTGGTGTGCAAAAGGAGGTCCTTGATTATGTTTTTCGTAGAAAATGCTTCCTGAAAAATTGGTGGGAATCTATTTTTTGTGATTTTCCAGCTGTTTCATTGATTACCAAAGGGCATGACAGTTTTGACGGGGGGTTGATCTTTAGGTGCCATCCAGCTATGGTTTTCACTGCCAATGATTTACATGAATGGAAAGATTTTCCCAAAGGTCTCAAGGTCCTTCTTCTTGAGGGAGACAATATTTCTGCTGCCGAGATAAGGGCAAAGCTTGAAGCCATGGACTATAATGTTTCTACATTTTGTGATGAGAATGAAGCCTTGTCAGCGATCGCTAGTAGGCCCGAAAGCTTCCACATTGCCATAGTGGAGGTGAGTTCAAGCAGTAGCCAGGGAGGTTTCAAATTTCTTGAGAATGCCAAGGACTTGCCGACCATTATGACATCTAAGAACCATTGCCTGAACACCATGATGAAGTGCATAGCGCTTGGTGCAGTTGAGTTCCTCAGCAAACCACTCTCCGAAGACAAGCTCAGAAATATCTGGCAGCATGTGGTTCATAAGGCATTCAGTCCTGGGACAAGTATCCTGTCTGAATCGCTTAAACCTGTCAAGGAATCTGTAGTGTCCATGTTGCAGCTCCAAACAGACAATGAACATCATGAAAGTAGAGTATCCATTGATATAGAGAAAGTAACCAGGTTTACTGATAATGATCCTGATAATGACCATGAACTGTCTCCTGGAAATGATAAATATCCAGCTCCTTCAACCCCACAATTGAGGCATGGGACAAGATTGTTAGACGATGGTGATTGCCAAGAGAAGACTAATTGCTCAACAGAAAAAGAAAGTGGGGAACATGATGGAGAATCTAAATCTGTCGAAACTACATGTGGAAATTTGAATGCTGAAACTGAAAGTACTCCTCAAGAAAGGAAATCTGAAATTACTTTGGCTAGGGAGGAAGTGGGTTTAGTTGATGCTTCCAAAGCTGAGAGTTTTGCTTCTTTACATACACAAAAAAGAAAGGTTCTAAGCAACACTGACAAAAATACAAACTCTCCAAATAAAGTAGTTCGTAGTGATTCTTGTGTTATAAGACCAAGTCGGAAGAAGATGAAAGTAGATTGGACGACTGAGCTGCACAAAAAATTTGTGAAGGCAGTTGAGCAACTAGGCATTGATCAAGCCATTCCTTCTAGAATATTGGAATTAATGAAAGTGGAGAACTTGACAAGGCATAATGTGGCAAGCCATCTTCAGAAGTATAGAATGCATAAGAGACAAATCTTACCCAAGGAAGAAGATCGGAAATGGTTGAATCAAAGAGAAAGGAGCTATTGTGTTCAAAGACCAATTATGGCCTTTCCTGCATATCATTCTAATCACACCCTACCTCTGGCTCCTGTATATCCTATGTGGGGACAATCTGGCAGTCAAACGGCTGGCATGCAGATTTGGAGCTCTCCTGGTTATCCCTTGTGGCAGCCAACTGCTGAAAATTGGCACTGGAAACCATTTCCAGGGATGCACGCAGATGCATGGGGCTGTCCAGTGTTACCAGTACCAACTCCTCAAGCTCCTTTTCCCTACTCTCAGAATATGCCTGCGTTGCTCAATGCTGATGCAGCAAATCACACGATTACCATGCTACAAAGTTCAGTCGAGAATTATCCGGCAGAGGAGGTGGTTGACGAGGTTGTGAAAGAGGCGTTAAGCAAACCATGGCTACCCTTGCCTTTGGGCCTGAAATCCCCCTCCACAGATAGTGTGTTAGTTGAGTTATCAAGGCAAGGCATTTCCAGCATACCTCCTAGGAGCATGAAGGGTTCAAGTTCAGGCTGA | 1947 | 0.4284 | MVAEFSFSGFHEILITGMIFVCLLFCERGISNEIFGVQKEVLDYVFRRKCFLKNWWESIFCDFPAVSLITKGHDSFDGGLIFRCHPAMVFTANDLHEWKDFPKGLKVLLLEGDNISAAEIRAKLEAMDYNVSTFCDENEALSAIASRPESFHIAIVEVSSSSSQGGFKFLENAKDLPTIMTSKNHCLNTMMKCIALGAVEFLSKPLSEDKLRNIWQHVVHKAFSPGTSILSESLKPVKESVVSMLQLQTDNEHHESRVSIDIEKVTRFTDNDPDNDHELSPGNDKYPAPSTPQLRHGTRLLDDGDCQEKTNCSTEKESGEHDGESKSVETTCGNLNAETESTPQERKSEITLAREEVGLVDASKAESFASLHTQKRKVLSNTDKNTNSPNKVVRSDSCVIRPSRKKMKVDWTTELHKKFVKAVEQLGIDQAIPSRILELMKVENLTRHNVASHLQKYRMHKRQILPKEEDRKWLNQRERSYCVQRPIMAFPAYHSNHTLPLAPVYPMWGQSGSQTAGMQIWSSPGYPLWQPTAENWHWKPFPGMHADAWGCPVLPVPTPQAPFPYSQNMPALLNADAANHTITMLQSSVENYPAEEVVDEVVKEALSKPWLPLPLGLKSPSTDSVLVELSRQGISSIPPRSMKGSSSG | 648 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst3g04190 | 648 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 406 | 461 | IPR006447 | GO:0003677 | |
Spst3g04190 | 648 | Gene3D | - | 403 | 464 | - | - | |
Spst3g04190 | 648 | SUPERFAMILY | Homeodomain-like | 404 | 463 | IPR009057 | - | |
Spst3g04190 | 648 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 403 | 462 | IPR017930 | - | |
Spst3g04190 | 648 | FunFam | Two-component response regulator | 402 | 465 | - | - | |
Spst3g04190 | 648 | Pfam | Myb-like DNA-binding domain | 409 | 458 | IPR001005 | - | |
Spst3g04190 | 648 | SUPERFAMILY | CheY-like | 103 | 222 | IPR011006 | - | |
Spst3g04190 | 648 | MobiDBLite | consensus disorder prediction | 268 | 348 | - | - | |
Spst3g04190 | 648 | Gene3D | - | 105 | 224 | - | - | |
Spst3g04190 | 648 | MobiDBLite | consensus disorder prediction | 298 | 327 | - | - | |
Spst3g04190 | 648 | Pfam | Response regulator receiver domain | 107 | 214 | IPR001789 | GO:0000160 | |
Spst3g04190 | 648 | ProSiteProfiles | Response regulatory domain profile. | 106 | 219 | IPR001789 | GO:0000160 | |
Spst3g04190 | 648 | PANTHER | TRANSCRIPTION ACTIVATOR GLK1 | 88 | 640 | IPR044825 | GO:0003700|GO:0045893 | |
Spst3g04190 | 648 | FunFam | Two-component response regulator-like APRR2 | 104 | 230 | - | - | |
Spst3g04190 | 648 | SMART | REC_2 | 105 | 215 | IPR001789 | GO:0000160 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst3g04190 | Spst-Chr3 | 93323983 | 93329158 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst3g04190 | 88 | 641 | Response Regulator Gene Family | AT4G18020 | 49.913 | 1.35e-144 | 429 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | GARP-ARR-B | Spst3g04190 | Response_reg | 1.7e-07 | CL0304 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst3g04190 | - | - | gmx:100777535 | 953.74 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Spst3g04190 | 3 | 93323983 | 93329158 | Spst3g04190 | 3 | 93323983 | 93329158 | PCT |