Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04190 ATGGTAGCTGAGTTTTCCTTTTCTGGTTTTCACGAGATCTTAATTACTGGGATGATATTTGTCTGTTTGCTGTTCTGTGAACGTGGAATCAGCAATGAGATCTTTGGTGTGCAAAAGGAGGTCCTTGATTATGTTTTTCGTAGAAAATGCTTCCTGAAAAATTGGTGGGAATCTATTTTTTGTGATTTTCCAGCTGTTTCATTGATTACCAAAGGGCATGACAGTTTTGACGGGGGGTTGATCTTTAGGTGCCATCCAGCTATGGTTTTCACTGCCAATGATTTACATGAATGGAAAGATTTTCCCAAAGGTCTCAAGGTCCTTCTTCTTGAGGGAGACAATATTTCTGCTGCCGAGATAAGGGCAAAGCTTGAAGCCATGGACTATAATGTTTCTACATTTTGTGATGAGAATGAAGCCTTGTCAGCGATCGCTAGTAGGCCCGAAAGCTTCCACATTGCCATAGTGGAGGTGAGTTCAAGCAGTAGCCAGGGAGGTTTCAAATTTCTTGAGAATGCCAAGGACTTGCCGACCATTATGACATCTAAGAACCATTGCCTGAACACCATGATGAAGTGCATAGCGCTTGGTGCAGTTGAGTTCCTCAGCAAACCACTCTCCGAAGACAAGCTCAGAAATATCTGGCAGCATGTGGTTCATAAGGCATTCAGTCCTGGGACAAGTATCCTGTCTGAATCGCTTAAACCTGTCAAGGAATCTGTAGTGTCCATGTTGCAGCTCCAAACAGACAATGAACATCATGAAAGTAGAGTATCCATTGATATAGAGAAAGTAACCAGGTTTACTGATAATGATCCTGATAATGACCATGAACTGTCTCCTGGAAATGATAAATATCCAGCTCCTTCAACCCCACAATTGAGGCATGGGACAAGATTGTTAGACGATGGTGATTGCCAAGAGAAGACTAATTGCTCAACAGAAAAAGAAAGTGGGGAACATGATGGAGAATCTAAATCTGTCGAAACTACATGTGGAAATTTGAATGCTGAAACTGAAAGTACTCCTCAAGAAAGGAAATCTGAAATTACTTTGGCTAGGGAGGAAGTGGGTTTAGTTGATGCTTCCAAAGCTGAGAGTTTTGCTTCTTTACATACACAAAAAAGAAAGGTTCTAAGCAACACTGACAAAAATACAAACTCTCCAAATAAAGTAGTTCGTAGTGATTCTTGTGTTATAAGACCAAGTCGGAAGAAGATGAAAGTAGATTGGACGACTGAGCTGCACAAAAAATTTGTGAAGGCAGTTGAGCAACTAGGCATTGATCAAGCCATTCCTTCTAGAATATTGGAATTAATGAAAGTGGAGAACTTGACAAGGCATAATGTGGCAAGCCATCTTCAGAAGTATAGAATGCATAAGAGACAAATCTTACCCAAGGAAGAAGATCGGAAATGGTTGAATCAAAGAGAAAGGAGCTATTGTGTTCAAAGACCAATTATGGCCTTTCCTGCATATCATTCTAATCACACCCTACCTCTGGCTCCTGTATATCCTATGTGGGGACAATCTGGCAGTCAAACGGCTGGCATGCAGATTTGGAGCTCTCCTGGTTATCCCTTGTGGCAGCCAACTGCTGAAAATTGGCACTGGAAACCATTTCCAGGGATGCACGCAGATGCATGGGGCTGTCCAGTGTTACCAGTACCAACTCCTCAAGCTCCTTTTCCCTACTCTCAGAATATGCCTGCGTTGCTCAATGCTGATGCAGCAAATCACACGATTACCATGCTACAAAGTTCAGTCGAGAATTATCCGGCAGAGGAGGTGGTTGACGAGGTTGTGAAAGAGGCGTTAAGCAAACCATGGCTACCCTTGCCTTTGGGCCTGAAATCCCCCTCCACAGATAGTGTGTTAGTTGAGTTATCAAGGCAAGGCATTTCCAGCATACCTCCTAGGAGCATGAAGGGTTCAAGTTCAGGCTGA 1947 0.4284 MVAEFSFSGFHEILITGMIFVCLLFCERGISNEIFGVQKEVLDYVFRRKCFLKNWWESIFCDFPAVSLITKGHDSFDGGLIFRCHPAMVFTANDLHEWKDFPKGLKVLLLEGDNISAAEIRAKLEAMDYNVSTFCDENEALSAIASRPESFHIAIVEVSSSSSQGGFKFLENAKDLPTIMTSKNHCLNTMMKCIALGAVEFLSKPLSEDKLRNIWQHVVHKAFSPGTSILSESLKPVKESVVSMLQLQTDNEHHESRVSIDIEKVTRFTDNDPDNDHELSPGNDKYPAPSTPQLRHGTRLLDDGDCQEKTNCSTEKESGEHDGESKSVETTCGNLNAETESTPQERKSEITLAREEVGLVDASKAESFASLHTQKRKVLSNTDKNTNSPNKVVRSDSCVIRPSRKKMKVDWTTELHKKFVKAVEQLGIDQAIPSRILELMKVENLTRHNVASHLQKYRMHKRQILPKEEDRKWLNQRERSYCVQRPIMAFPAYHSNHTLPLAPVYPMWGQSGSQTAGMQIWSSPGYPLWQPTAENWHWKPFPGMHADAWGCPVLPVPTPQAPFPYSQNMPALLNADAANHTITMLQSSVENYPAEEVVDEVVKEALSKPWLPLPLGLKSPSTDSVLVELSRQGISSIPPRSMKGSSSG 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04190 648 NCBIfam myb-like DNA-binding domain, SHAQKYF class 406 461 IPR006447 GO:0003677
Spst3g04190 648 Gene3D - 403 464 - -
Spst3g04190 648 SUPERFAMILY Homeodomain-like 404 463 IPR009057 -
Spst3g04190 648 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 403 462 IPR017930 -
Spst3g04190 648 FunFam Two-component response regulator 402 465 - -
Spst3g04190 648 Pfam Myb-like DNA-binding domain 409 458 IPR001005 -
Spst3g04190 648 SUPERFAMILY CheY-like 103 222 IPR011006 -
Spst3g04190 648 MobiDBLite consensus disorder prediction 268 348 - -
Spst3g04190 648 Gene3D - 105 224 - -
Spst3g04190 648 MobiDBLite consensus disorder prediction 298 327 - -
Spst3g04190 648 Pfam Response regulator receiver domain 107 214 IPR001789 GO:0000160
Spst3g04190 648 ProSiteProfiles Response regulatory domain profile. 106 219 IPR001789 GO:0000160
Spst3g04190 648 PANTHER TRANSCRIPTION ACTIVATOR GLK1 88 640 IPR044825 GO:0003700|GO:0045893
Spst3g04190 648 FunFam Two-component response regulator-like APRR2 104 230 - -
Spst3g04190 648 SMART REC_2 105 215 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04190 Spst-Chr3 93323983 93329158 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04190 88 641 Response Regulator Gene Family AT4G18020 49.913 1.35e-144 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Spst3g04190 Response_reg 1.7e-07 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04190 - - gmx:100777535 953.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04190 3 93323983 93329158 Spst3g04190 3 93323983 93329158 PCT