Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04180 ATGGGAGGGGCAACACTGCCACCAGGATTTCGTTTCCATCCAACTGATGAGGAACTAGTGGGATACTACCTGAAAAGAAAAGTGGAGGGGCTTGAAATTGAGCTTGAAGTTATCCCAGTGATTGATTTTTACAAATTCGATCCCTGGGAGTTGCCGGAGAAGTCTTTCCTTCCAAAACGGGATTTGGAATGGTTTTTCTTTTGTCCACGGGATCGCAAGTACCCAAATGGATCAAGAACAAATAGAGCTACCAAAGCTGGGTATTGGAAAGCCACTGGAAAAGACAGAAAAGTGGTGTGCCAGTCTAATCCATCCACTGTTACAGGGTACCGCAAGACCTTGGTTTTCTATCTAGGGAGGGCCCCTTTAGGAGATAGAACTGATTGGGTCATGCATGAGTATCGCCTCTGTGATGATCTTGGTCACGCTACACCATCTTTCCAGGGTGGTTTTGCCTTGTGCCGGGTTATTAAGAAGAATGAGAAGGCAGGTGCTACACATGGAGAAAACAAGGGTAAAAGGGCTGGAAGCAGTTCCATCAATGGGAGTGACACCACAGTAAGATTTTCTGGTGAGCCATTCAGCAACTCTGGTGATGCTTCCTCTCAAGCAAGCCACCTGAATAATGAAAGTCGTTATTCAAGCCCTATTACTTCTCCATACAATGTGGCTCCAACGGGAGAGATTAACCAAGTTTCTGTGGAAACCAATCCTTCTAACTTCTGGATCTCCCCTGACATGATTCTTGATTCTTCAAAGGACTATCCTCAATTACAACATGCTGTGGCTGAATATTTTCCACGATATGACTTGCCAAATATGGGGATACAATGGCAATCATTGGAACATCCAGAAACTTCATCTAGTTTGTCCTACTCAAATTTCAATGGAGAAGTTGAATTTGCTGATACTCTCAGTCAAATTGGCGGCATGTCACCTTACTCAAGACAATGGAATTCCATGGACTTCTATGGAAATGGGAATGGAAACGGGGATGTTCCATACGAAGATTATGATCAAATTAACTCAATCTCATATCCAGAATCCTTTTAA 1053 0.4349 MGGATLPPGFRFHPTDEELVGYYLKRKVEGLEIELEVIPVIDFYKFDPWELPEKSFLPKRDLEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKVVCQSNPSTVTGYRKTLVFYLGRAPLGDRTDWVMHEYRLCDDLGHATPSFQGGFALCRVIKKNEKAGATHGENKGKRAGSSSINGSDTTVRFSGEPFSNSGDASSQASHLNNESRYSSPITSPYNVAPTGEINQVSVETNPSNFWISPDMILDSSKDYPQLQHAVAEYFPRYDLPNMGIQWQSLEHPETSSSLSYSNFNGEVEFADTLSQIGGMSPYSRQWNSMDFYGNGNGNGDVPYEDYDQINSISYPESF 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04180 350 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 221 - -
Spst3g04180 350 Pfam No apical meristem (NAM) protein 7 136 IPR003441 GO:0003677|GO:0006355
Spst3g04180 350 MobiDBLite consensus disorder prediction 172 219 - -
Spst3g04180 350 FunFam Nac domain-containing protein 86 15 162 - -
Spst3g04180 350 ProSiteProfiles NAC domain profile. 6 159 IPR003441 GO:0003677|GO:0006355
Spst3g04180 350 Gene3D NAC domain 15 164 IPR036093 GO:0003677|GO:0006355
Spst3g04180 350 MobiDBLite consensus disorder prediction 164 219 - -
Spst3g04180 350 SUPERFAMILY NAC domain 4 159 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04180 Spst-Chr3 93178460 93180187 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04180 1 300 NAC Transcription Factor Family AT4G17980 54.305 1.11e-106 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst3g04180 NAM 6.4e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04180 - - gmx:100792714 647.121