Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04178 ATGGGTTGCAGCATGAGGGAAAAACACATCAGGGCCAATCGGAGACTCCGATCAGCGAAACCGGACTCCGATTCTTGCGACAAAGATGCCATATCCAAATCCATAGCCGAGTCTGGTCTCAAGCCCTTCAAATACCACCATATGGCTGTCAACGATTCTTCCCAGAGCCCAAATTCAAACCCTAATGTCGAGGAAACCGGGTGGGGTTACTGTACAGAGGAACAATTGGAAGAGATTCTGTTGAAAAACTTGGAGTTTATTTACAATGAAGCTGTGGCAAAGCTTGTTGCGTTGGGTTACGATGAGGATGTTGCTGTTAAGGCCATGCTGCGAAATGGGCATTGTTATGGTGGCATGGATGCGCTGACGAATATTTTGCACAATTCCTTGGCGTATTTGAATAGTAATAGTGATGGTGGTGGTGGGAATATGGATGAGACTGAACCTGTATTCTCTAATTTGAGGCAGTTGGAGGAGTACTCTGTGGCGGCTTTGGTGTGTTTGGTGCAACAGGTGAGGCCACATTTGAGCAAGGGTGATGCAATGTGGTGTTTGCTAATGAATGATCTTCATGTTGGGAGGGCTAGTGCTATGGATATTCCAGTGGCAGGCGCTGGGAGCCCTGGTCCTCCTACCGGTGAGGGAGGTGTTAATTCGACTAGTGTTATCGCTCCAGCTTTTTGTAGGTTTCATGGAGGGTGGGGATTTGGAAATGGGGGAGGCTTAGAATTTCCTGGCGTTATCGCTTGCGGGACAGAGATGAATTTACAGCTGCAAAGAGACATTGAGTTTCCGAAGAGGTTTAATCTTTCTCCTTCAATGAAGTCCTTATTAAAGAGAAATGTTGCAATATTTGCTGCTGGTTTTAGGGCGAATTCCAAGCAGTTGCAGGCGCAGGCAAAGGCCATTGCTGGCCGGAGTAATGCATATAATTTTGATTCTTTTGCTGCGACCGGGACAGGGGTACCGGCTGAGCAATCTGGAGGAGATTCACAGAATCTTGATAACCAAGATGCTGTGAATTCGGTGCTGAGTAAATTTCGTGATTTGAATCTTGATGAGAATTTGGAGCTTGTGGCGGAAGATCAGAAGGATGAGGTGATAGTCACTTTATTTCATCAAATCAAGGATCTTGAGAAACAGGTCAGTGAGCGAAAAGATTGGGCTCATCAGAAGGCAATGCAGGCAGCTAGAAAGCTAAGCAGTGATCTAACTGAGCTCAAGATGTTGCGGATGGAAAGAGAGGAGACTCAAAAATTGAAGAAAGGGAAACCAGTCCTTGAGGACACAACCATGAAGAGGCTCTCTGAGATGGAGAATGCTTTGAGAAAAGCCAGTGGTCAACTGGACCTTGCAAATGCAGCTGTGAGGAGACTAGAAACTGAGAATGCAGAAATGAAAGCAGAGATGGAGGCTTCCAAATTAAGTGCATCAGAATCGGTGACAGCTTGCTTAGAAGTTGCAAAAAGGGAGAAAAAATGCTTAAAAAAACTTCTAGCTTGGGAAAAACAGAAAACTAAGCTTCAGCAAGAGATTTCTGCTGAAAGAGAGAAGATATCGGAGACAGAAGAAATGTTGGTTCAGATTAGACAGAGTCAAAAGGAAACTGAGGTTAGGTGGAAGGAGGAGTTGAAGGCTAAAGAGGAAGCCTTGACACTGGTTGAGGAGGAACGGCGTCGTAAGGAAGATGCTGAATCTAATAATAAGAGGAGGGTTGAGGCTTTGCGTCTGAAGATAGAGATAGATTTCCAGCGCCACAAGGATGATCTACTAAGACTGGAGCAGGAACTTTCGCGCCTTAAAGCATCAGCTCAGTCTGCTGAGTTGCATCACCAATCAAGCACTTCACCTACAAGCAACTCTGAGGGTGCAAAGCCCCAAAGAGAGACCATTGCTAGGCTGCTTCAACAATTAGATAATCTGGACGATTTTTCAGATAAAGAAGTGAATAGCAACAGAGAATGCATTCTATGTATGAAAGATGAAGTCTCTATTGTTTTCTTGCCCTGTGCACACCAAGTTATGTGTGCTAGTTGCAGTGATGAGTATGGAAGAAAAGGTAAAGCTGCTTGTCCTTGCTGCAGGGTTCAGATCCAACAGAGAATCCGTGTATTTGGGGCAAGTTCCTAG 2130 0.4516 MGCSMREKHIRANRRLRSAKPDSDSCDKDAISKSIAESGLKPFKYHHMAVNDSSQSPNSNPNVEETGWGYCTEEQLEEILLKNLEFIYNEAVAKLVALGYDEDVAVKAMLRNGHCYGGMDALTNILHNSLAYLNSNSDGGGGNMDETEPVFSNLRQLEEYSVAALVCLVQQVRPHLSKGDAMWCLLMNDLHVGRASAMDIPVAGAGSPGPPTGEGGVNSTSVIAPAFCRFHGGWGFGNGGGLEFPGVIACGTEMNLQLQRDIEFPKRFNLSPSMKSLLKRNVAIFAAGFRANSKQLQAQAKAIAGRSNAYNFDSFAATGTGVPAEQSGGDSQNLDNQDAVNSVLSKFRDLNLDENLELVAEDQKDEVIVTLFHQIKDLEKQVSERKDWAHQKAMQAARKLSSDLTELKMLRMEREETQKLKKGKPVLEDTTMKRLSEMENALRKASGQLDLANAAVRRLETENAEMKAEMEASKLSASESVTACLEVAKREKKCLKKLLAWEKQKTKLQQEISAEREKISETEEMLVQIRQSQKETEVRWKEELKAKEEALTLVEEERRRKEDAESNNKRRVEALRLKIEIDFQRHKDDLLRLEQELSRLKASAQSAELHHQSSTSPTSNSEGAKPQRETIARLLQQLDNLDDFSDKEVNSNRECILCMKDEVSIVFLPCAHQVMCASCSDEYGRKGKAACPCCRVQIQQRIRVFGASS 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04178 709 Pfam Family of unknown function (DUF6592) 83 198 IPR046527 -
Spst3g04178 709 Coils Coil 583 610 - -
Spst3g04178 709 Coils Coil 498 525 - -
Spst3g04178 709 CDD RING-HC_MIP1-like 650 704 - -
Spst3g04178 709 PANTHER OS05G0141500 PROTEIN 1 704 IPR046934 -
Spst3g04178 709 Coils Coil 537 574 - -
Spst3g04178 709 SUPERFAMILY RING/U-box 636 701 - -
Spst3g04178 709 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 642 706 IPR013083 -
Spst3g04178 709 Coils Coil 435 476 - -
Spst3g04178 709 MobiDBLite consensus disorder prediction 602 626 - -
Spst3g04178 709 MobiDBLite consensus disorder prediction 1 28 - -
Spst3g04178 709 Pfam Zinc finger, C3HC4 type (RING finger) 652 700 - -
Spst3g04178 709 ProSiteProfiles Zinc finger RING-type profile. 655 695 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04178 Spst-Chr3 93165379 93172264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04178 641 705 C3H Transcription Factor Family AT1G73950 36.232 1.50e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04178 - - gmx:100777787 1187.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04178 3 93165379 93172264 Spst3g04178 3 93165379 93172264 PCT