Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04175 ATGCCAGTTCCACTTGCCCCCTACCCAACACCACCAGCTCCTTATACACCACCAGCTAATGGCGCACAGAGTCAACTTGTCTGTTCTGGGTGTAGAAACCTTCTCATGTATCCAGTTGGAGCCACCTCTGTGTGCTGTGCTGTTTGCAATGCAGTCACAGCAGTGCCACCTCCTGGCACAGAAATGGCCCAGTTAGTTTGTGGAGGTTGCCATACTTTACTCATGTACATCCGTGGAGCGACAAATGTGCAATGTTCTTGTTGTCACACAGTCAATCTAGCTTTGGAAGCGAATCAGGTGGCACATGTCAACTGCGGGAACTGCAGGATGCTACTGATGTACCAATATGGAGCAAGATCGGTGAAGTGTGCAGTTTGCAATTTTGTAACATCAGTTGGGGCCAGTGCCACAACAAGCACCACGGAGCAGAAGTTCAGCAGTGTAACCATACAATAG 456 0.4934 MPVPLAPYPTPPAPYTPPANGAQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATNVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGASATTSTTEQKFSSVTIQ 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04175 151 PANTHER PROTEIN LSD1 16 55 IPR040319 -
Spst3g04175 151 Pfam LSD1 zinc finger 105 129 IPR005735 -
Spst3g04175 151 Pfam LSD1 zinc finger 67 91 IPR005735 -
Spst3g04175 151 Pfam LSD1 zinc finger 28 52 IPR005735 -
Spst3g04175 151 NCBIfam zinc finger domain, LSD1 subclass 25 55 IPR005735 -
Spst3g04175 151 NCBIfam zinc finger domain, LSD1 subclass 102 132 IPR005735 -
Spst3g04175 151 NCBIfam zinc finger domain, LSD1 subclass 64 93 IPR005735 -
Spst3g04175 151 SUPERFAMILY Multiheme cytochromes 28 126 IPR036280 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04175 Spst-Chr3 93137408 93138869 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Spst3g04175 zf-LSD1 9.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04175 - - qsu:112000975 259.996