Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04170 ATGGACGCTCGCGAACCGCCCCGTCCACCGCCGCCCTCCATCATGGCAGGGCCTACAGCCTATGCACCCAACAACATCGGCCCTAATTCATCCGCCGCCATCATGATGGCACCAGCCACCGCGCGATTTCCCTTCGGTGTCGTGCAGCCACCGCAGCAACAACCTCCGCCCGCGGAGCCTTTCCCTCTCTCCCCTGCTGCTGCCTACGACGGTTCCTCCTCGCCGATGAAGCCATGTTCCCTAGCTAAGAAGAAGCGCGGCCGTCCTCGGAAGTACTCGCCGGACGGTAACATTGCCCTCGGCCTTGCTCCCACTCATGTCTCCCCTCCACCTCCCTCTGGCGCCGTTTCTGGCAGCGGAATCGGCGGAGATTCGGCCGGTACGGCCTCCGAGCCTCCGGCGAAAAAACACCGTGGAAGGCCTCCCGGGTCTGGGAAGAAACAGCTGGATGCGCTTGGAGCTGGTGGGGTTGGATTCACTCCCCACGTGATCTTGGTGGAGTCTGGCGAGGTAATCCCAAATAAAAAGCTAGTCTTGCCTAAAATGCAATGCAGTGTACTGGATATCACAGCAAAAATTATGGCATTTTCTCAACAAGGGCCTCGGACAGTTTGTATTCTCTCTGCTATTGGTGCAATCTGTAATGTTACCCTTCGACAGCCTGCACTATCTGGTGGTACTGCTACATACGAGCGAAATAAGGATACTGACAAGGTAGTTTGGCCCTTCCGTGCTAAAGATCTAACAGAATTGGAGCGGCTTATATCTGTTGCATTTAAAGCTTTTCTCTGGTGTGACCTGCTTGATCAAATGGTTAGGATCTTTTTGCTCTTTCCCCAAGCTAGAGCTCTGGAGGGAGTTTGTCCTAACACCGAAGATGGGACGAGTGTGGGCCGATTTGAGATTATATCTTTATCAGGTGCTATGCAGCAATCTGAAAGTAATGGTGAACGTAGTAGAACATGCACTTTGAATGTGACCCTTGCAGGGTCCGATGGACGTGTTTTGGGTGGCGGGGTTGCCGGAACGCTAACTGCAGCATCAACTGTACAGGTCATTGTGGGTAGCTTTATTGTGGATGCGAAAAAGTCGAGCTCGAATGTCCTAAAATCTGGACCTTCTGCTGCACCACCCCCCCAAATGCTAACCTTTGGTGCACCCATGACTCCAACTAGTCCTACCTCTCAAGGGCCTTCAACTGAGTCCTCTGAGGAACATGACCACACTCCTTTTTGTAGGGGGCCTGGGTCTGGACCTGGACCTGGACTCTACAATAATACTAGTCAGCCCGTTCATAACATGCCGATTGGCCTTTTTACGCCCAATATGTCCCACTCTTTAAAACCTTCCTCTCTTCTGCATCACACCTTAAACTTCCCTGTTCCATCCCAACTTGTCCATAGCCAAACTAACACTTCCACGCGCCACTCCCCGAACGTCACACCTCAACCACTACCGCGCCACCAGATCAAACGCTGA 1479 0.5301 MDAREPPRPPPPSIMAGPTAYAPNNIGPNSSAAIMMAPATARFPFGVVQPPQQQPPPAEPFPLSPAAAYDGSSSPMKPCSLAKKKRGRPRKYSPDGNIALGLAPTHVSPPPPSGAVSGSGIGGDSAGTASEPPAKKHRGRPPGSGKKQLDALGAGGVGFTPHVILVESGEVIPNKKLVLPKMQCSVLDITAKIMAFSQQGPRTVCILSAIGAICNVTLRQPALSGGTATYERNKDTDKVVWPFRAKDLTELERLISVAFKAFLWCDLLDQMVRIFLLFPQARALEGVCPNTEDGTSVGRFEIISLSGAMQQSESNGERSRTCTLNVTLAGSDGRVLGGGVAGTLTAASTVQVIVGSFIVDAKKSSSNVLKSGPSAAPPPQMLTFGAPMTPTSPTSQGPSTESSEEHDHTPFCRGPGSGPGPGLYNNTSQPVHNMPIGLFTPNMSHSLKPSSLLHHTLNFPVPSQLVHSQTNTSTRHSPNVTPQPLPRHQIKR 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04170 492 MobiDBLite consensus disorder prediction 466 484 - -
Spst3g04170 492 MobiDBLite consensus disorder prediction 1 17 - -
Spst3g04170 492 MobiDBLite consensus disorder prediction 49 63 - -
Spst3g04170 492 CDD DUF296 160 357 IPR005175 -
Spst3g04170 492 SUPERFAMILY AF0104/ALDC/Ptd012-like 298 358 - -
Spst3g04170 492 MobiDBLite consensus disorder prediction 385 400 - -
Spst3g04170 492 SMART AT_hook_2 83 95 IPR017956 GO:0003677
Spst3g04170 492 SMART AT_hook_2 135 147 IPR017956 GO:0003677
Spst3g04170 492 SUPERFAMILY AF0104/ALDC/Ptd012-like 188 231 - -
Spst3g04170 492 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 51 406 IPR039605 GO:0003680
Spst3g04170 492 MobiDBLite consensus disorder prediction 45 152 - -
Spst3g04170 492 MobiDBLite consensus disorder prediction 367 429 - -
Spst3g04170 492 Pfam Plants and Prokaryotes Conserved (PCC) domain 188 357 IPR005175 -
Spst3g04170 492 MobiDBLite consensus disorder prediction 466 492 - -
Spst3g04170 492 Gene3D - 187 370 - -
Spst3g04170 492 MobiDBLite consensus disorder prediction 1 30 - -
Spst3g04170 492 ProSiteProfiles PPC domain profile profile. 155 378 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04170 Spst-Chr3 93095308 93101640 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04170 9 439 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 32.114 8.86e-41 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04170 - - gmx:100789717 292.737
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04170 3 93095308 93101640 Spst3g04170 3 93095308 93101640 PCT