Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04168 ATGGCTGGTTTGGATTTAGGAAGCGCTTCACGCTTTGTTCAAAACCTTCACAGACCGGACTTGCACTTGCAGCAGCTTCATCGCGATTCGGAGGAGCAAGAGACGCCGCCGCAGAACCGCGGAACGGCGCCGTTCGACGACGATGACCCAAGCCAAGGATTGGACCTAGCTTCGGTGGGTCCCGGCGACGTGGTCGGTCGGCGTCCACGTGGAAGGCCGCCGGGCTCCAAGAACAAGCCGAAGCCGCCAGTGATAATCACGCGGGAGAGCGCCAACACACTCCGCGCGCACATCCTTGAGGTCGGAAGCGGCTCCGACGTCTTCGACTGCGTCACCACCTATGCGCGCCGCCGTCAGCGTGGGATCTGCATCCTCAGCGGTAGCGGCACCGTCACCAATGTAAGCCTCCGCCAGCCAGCCGCTGCCGGCGCCGTCGTCACGCTCCACGGTCGCTTCGAGATTCTCTCCCTCTCTGGGTCCTTCCTCCCGCCGCCCGCTCCGCCGGGGGCGACCAGTCTCACCATCTACCTCGCGGGAGGGCAGGGCCAGGTGGTTGGAGGAAACGTGGTTGGAGAGCTCACAGCGGCGGGGCCGGTGATCGTCATCGCCGCGTCGTTCACGAACGTAGCCTACGAGAGGCTACCGTTAGAAGAAGAAGAACAGCTTCAGATTCAGCCACCTGCTACGACGTCGTCTCACGGCGTTGGAAATAACAACGGCAACAATAACAATAACAACCCATTCCCCGACCCTTCTTCGGGACTTCCCTTCTTCAATTTACCTCTGAATATGCAGAACGTTCAGTTGCCCGTTGAGGGTTGGGCGGGAAACGCTGCTTCACGTCCACCACCATTTTGA 858 0.6084 MAGLDLGSASRFVQNLHRPDLHLQQLHRDSEEQETPPQNRGTAPFDDDDPSQGLDLASVGPGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVGSGSDVFDCVTTYARRRQRGICILSGSGTVTNVSLRQPAAAGAVVTLHGRFEILSLSGSFLPPPAPPGATSLTIYLAGGQGQVVGGNVVGELTAAGPVIVIAASFTNVAYERLPLEEEEQLQIQPPATTSSHGVGNNNGNNNNNNPFPDPSSGLPFFNLPLNMQNVQLPVEGWAGNAASRPPPF 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04168 285 SUPERFAMILY AF0104/ALDC/Ptd012-like 91 226 - -
Spst3g04168 285 MobiDBLite consensus disorder prediction 24 85 - -
Spst3g04168 285 CDD DUF296 95 178 IPR005175 -
Spst3g04168 285 Gene3D - 94 230 - -
Spst3g04168 285 ProSiteProfiles PPC domain profile profile. 91 227 IPR005175 -
Spst3g04168 285 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 30 260 IPR014476 GO:0003680
Spst3g04168 285 MobiDBLite consensus disorder prediction 223 254 - -
Spst3g04168 285 MobiDBLite consensus disorder prediction 220 254 - -
Spst3g04168 285 PIRSF ESCAROLA 7 284 IPR014476 GO:0003680
Spst3g04168 285 Pfam Plants and Prokaryotes Conserved (PCC) domain 95 208 IPR005175 -
Spst3g04168 285 FunFam AT-hook motif nuclear-localized protein 94 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04168 Spst-Chr3 93087620 93088477 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04168 1 283 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 68.525 1.25e-105 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04168 - - pvu:PHAVU_003G230600g 473.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04168 3 93087620 93088477 Spst3g04168 3 93087620 93088477 PCT