Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04166 ATGTGGAATCCAAGGGACCAAGAAGATGACTCCTGGGAGGTCAGGGCCTTCGCAGAGGACACCAACAACATCATGGGCACCACATGGCCTCCAAGGTCCTACTCCTGCACCTTCTGTAGAAGGGAGTTCCGTTCAGCACAAGCCCTTGGTGGCCACATGAACGTTCACCGCCGCGACCGTGCTCGCCTTCACCAACCATCACCGATCAACAACAGCCACCACCAACCCATTTCCTCTCTCTCCCACTCACCCTCTTTCCTCAATCTCTCTCACCCTCCGGAGTCTTTTGCAAATGGTGGGGTGTGCCTCTTCTACCCCTTCCCTAGCCCTAACCCTGCTCCATTCTCTCCTCTTGGCCACACCACTAGTTTCAATACTGCATGTGCTGAATCTCCCTCCTCTCTTTTCTCTGTCTCTTCTTCCCTTTCACACCCTCCAATGAGAGTCCCAACTTGCTCAAATGCCTCCTTTGATTTCTCAGTGGCGCAGCCTGCGGCAGGGAGGAGGAATGTTTTCTCTCCTTATTCTGAGAAAGTGGAGCAAGAACCGGCAACCTCCTCGGTCCATCATGGCCACCATGAGGAGCTTGATCTAGAGCTTCGTTTGGGAAATAGATCAACATCAACGTCATGA 633 0.5308 MWNPRDQEDDSWEVRAFAEDTNNIMGTTWPPRSYSCTFCRREFRSAQALGGHMNVHRRDRARLHQPSPINNSHHQPISSLSHSPSFLNLSHPPESFANGGVCLFYPFPSPNPAPFSPLGHTTSFNTACAESPSSLFSVSSSLSHPPMRVPTCSNASFDFSVAQPAAGRRNVFSPYSEKVEQEPATSSVHHGHHEELDLELRLGNRSTSTS 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04166 210 ProSitePatterns Zinc finger C2H2 type domain signature. 36 56 IPR013087 -
Spst3g04166 210 Gene3D Classic Zinc Finger 24 81 - -
Spst3g04166 210 MobiDBLite consensus disorder prediction 183 201 - -
Spst3g04166 210 PANTHER OS07G0101800 PROTEIN 6 205 - -
Spst3g04166 210 ProSiteProfiles Zinc finger C2H2 type domain profile. 34 61 IPR013087 -
Spst3g04166 210 SUPERFAMILY beta-beta-alpha zinc fingers 31 61 IPR036236 -
Spst3g04166 210 MobiDBLite consensus disorder prediction 176 210 - -
Spst3g04166 210 Pfam C2H2-type zinc finger 34 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04166 Spst-Chr3 92999689 93000321 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04166 1 93 C2H2 Transcription Factor Family AT4G17810 57.426 1.30e-31 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst3g04166 zf-C2H2_6 9.6e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04166 - - pvu:PHAVU_003G230700g 347.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04166 3 92999689 93000321 Spst3g04166 3 92999689 93000321 ECH
Spst3g04166 3 92999689 93000321 Spst3g04166 3 92999689 93000321 PCT