Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04161 ATGATGGAGGAATTAAACAAACCAATGGATGCATCTGCCAACTGGTTATCTGATTTGGATATGGATGATTACAGTTTATTTCCAGATGAGTGTGCCCTGAACTTGAACTTGTTTGATGACCAAGAGTTTCTATCACAAGACATTGCTAGTGCCCTCGAAGAACAGACACAGACCCTTCACCAATCTCTGTCTTCTGAGTGCCCTTCCAAAACTGTGAGCAACTCATCCACAGATGAAACCAGTTTTGACTTTGAGAGACCGGCCAAGTTGCTGAAAACGACAAGCAGTAGTTGCTGCAACTCTGACTCATCCACCATCACCAACAGCCTCTCACCAAAACTTTCCCCATCCTCCTCCTTCTCCTCCTTTCAGTCTCAGATTCTCTCTTTTGACAACCCAAACTCCTCCCCTCCCAACACCACCACCCAGTTTTACGGCTTTGACGGTACCTTAAACCCAACACAGAACGACATGGTGTCTGTGTCAGTGCACCAATTGGCAAGATCACGGCTCCCAAATCAAACCCCAAAAGTTTCCTCAAAAAATCAAAACTTTGAAACAAAACCCTCTCATGGTAAGAGATCTCCTGCTCACGCTCAGGATCACATCATGGCCGAGAGAAAGCGAAGGGAGAAGCTCAGCCAGAGCTTCATTGCTCTAGCAGCTCTTGTTCCTGGACTAAAGAAGATGGATAAGGCATCTGTGTTAGGGGACGCTATCAAATATGTGAAAGAGCTTAAAGAGCGTTTGACAGTGCTGGAAGAGCAGGGCAAGAAAACAAGGGCAGGATCGGTGGTGGTTCTGAACAAACCAGACCTCTCTGGCGATGATGATTCTTCTTCATGTGATGAGAGCATTGATGCTGATAGTGTGTGTGACTCACTGTTTGAAGCGGAAACAAGAGTGTCAGGGAAGGAGATGCTGCTTCGGATCCACTGCCAGAAGCAAAAGGGTCTTCTTGTCAAATTACTTGCCGAGATTCAAAGAAATAACCTATTCGTTATCAATAGCAGCATCTTACCATTCGGTGATTCTATCCTTGACATCACCATAGTTGCTCAGATGGGAGAAAATTACAATATGACCTCGAAGGAACTAGTCAAGAACCTACGCGTGGCGGCACATAAGATTATGTCATAA 1140 0.4535 MMEELNKPMDASANWLSDLDMDDYSLFPDECALNLNLFDDQEFLSQDIASALEEQTQTLHQSLSSECPSKTVSNSSTDETSFDFERPAKLLKTTSSSCCNSDSSTITNSLSPKLSPSSSFSSFQSQILSFDNPNSSPPNTTTQFYGFDGTLNPTQNDMVSVSVHQLARSRLPNQTPKVSSKNQNFETKPSHGKRSPAHAQDHIMAERKRREKLSQSFIALAALVPGLKKMDKASVLGDAIKYVKELKERLTVLEEQGKKTRAGSVVVLNKPDLSGDDDSSSCDESIDADSVCDSLFEAETRVSGKEMLLRIHCQKQKGLLVKLLAEIQRNNLFVINSSILPFGDSILDITIVAQMGENYNMTSKELVKNLRVAAHKIMS 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04161 379 MobiDBLite consensus disorder prediction 187 204 - -
Spst3g04161 379 Gene3D - 190 262 IPR036638 GO:0046983
Spst3g04161 379 MobiDBLite consensus disorder prediction 172 186 - -
Spst3g04161 379 PANTHER BHLH TRANSCRIPTION FACTOR 54 375 - -
Spst3g04161 379 MobiDBLite consensus disorder prediction 172 204 - -
Spst3g04161 379 Coils Coil 236 256 - -
Spst3g04161 379 SMART finulus 203 252 IPR011598 GO:0046983
Spst3g04161 379 CDD bHLH_AtNAI1_like 198 270 - -
Spst3g04161 379 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 197 246 IPR011598 GO:0046983
Spst3g04161 379 Pfam Helix-loop-helix DNA-binding domain 201 246 IPR011598 GO:0046983
Spst3g04161 379 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 202 261 IPR036638 GO:0046983
Spst3g04161 379 MobiDBLite consensus disorder prediction 60 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04161 Spst-Chr3 92906409 92908205 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04161 86 373 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.614 7.55e-53 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst3g04161 HLH 4.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04161 - - gmx:100788128 590.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04161 3 92906409 92908205 Spst3g04161 3 92906409 92908205 ECH
Spst3g04161 3 92906409 92908205 Spst3g04160 3 92889625 92891272 PCT