Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04160 ATGCGTGCTTATGGTGCTACCCTCTATAAATCTAAACGAGCTTTCCTTGTATTGGGTTCGCGTTCAGCCATTCGGCTATTGCCGGAAGAGGTAATTGAGATCTCGCTTTCTCCTGGAGTATATATGAACGACAGAACCATGACCTCAATGGAGGAATCATGGACTAGTTGGCTGTGTGATATGGAACCAGATGATTACAGTTTCAACGGTCAAGCAGACATAAAGATGGAGGATGTGAATGGAAGTTTAGCATCTCCTCGTCATATAGCCACTGCATTAGAAGAGAACCCGCAGAGTTCTTTTTCTACCGAGAGTCACTCTTCAGTGACTGAGAATGGCATAGAAGAGAGGCCTTTCAAGTTACTCAAGACATGCACTTCAAACTCTGCCAAAACTGACCAACTCTCACGAAAGACAGCTTCCACTCCCAGCTCCTATATTCTCTCCTTTGACAACACCAATCCAACACCAACAAAGGTTGAATCGGCTATAAATCCAGGAACCAAGGTTGCGAATCGCGGTATTGCTCTGCCTTCAAAGAGTGAACCAAAACGTGTTACTCAGGATAGCAAGAAAACGGGCTCGTTGGGAAGATCTTCTCACAACACACAAGATCACATAATCGCCGAGAGAATGAGGAGAGAAAAGATTAGCCAGCAGTTCATAGCCCTCTCGGCTCTTATTCCAGACCTCAAAAAGATGGACAAGGTGTCTGTGTTGGGGGAAGCTATAAGGTATGTGCAGCAGCTGAGGGAGCAAGTGCAAGTGATGGAGGAGCAGGGCAAAAGGAAAAGCCAGGAATGGGTGATGCGTGCGAAGAAATCTCAGGTTTGTGTTGCTGTGGACGAGGATGTCTCAGACACTTCATCAAATTCCTGTGAGTACGGAAATTCCGATGATCCCTCATCCAAAACAAATCTATCACTACCAGAAGTAGAAGCAAGGGTGTCAAAGAAGAACGTGCTGATTCGAATCCTCTGCCAGAAAGAAAAGGTAGTGCTGGTGAACATTTTTAGAGAGATAGAGAAACTTCATCTCTCAGTCATCAATAGCAGCGCCTTATCTTTCGGTTCCTCTGTTCTCGACGCAACCATCGTAGCCGAGATGGAGGATGAATTGAACATGAGCGAGAAGGAACTGGCCGAAAATCTGAGAGTAGGGCTGATGCAATTTATGTAG 1179 0.4563 MRAYGATLYKSKRAFLVLGSRSAIRLLPEEVIEISLSPGVYMNDRTMTSMEESWTSWLCDMEPDDYSFNGQADIKMEDVNGSLASPRHIATALEENPQSSFSTESHSSVTENGIEERPFKLLKTCTSNSAKTDQLSRKTASTPSSYILSFDNTNPTPTKVESAINPGTKVANRGIALPSKSEPKRVTQDSKKTGSLGRSSHNTQDHIIAERMRREKISQQFIALSALIPDLKKMDKVSVLGEAIRYVQQLREQVQVMEEQGKRKSQEWVMRAKKSQVCVAVDEDVSDTSSNSCEYGNSDDPSSKTNLSLPEVEARVSKKNVLIRILCQKEKVVLVNIFREIEKLHLSVINSSALSFGSSVLDATIVAEMEDELNMSEKELAENLRVGLMQFM 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04160 392 SMART finulus 207 256 IPR011598 GO:0046983
Spst3g04160 392 Gene3D - 195 267 IPR036638 GO:0046983
Spst3g04160 392 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 204 267 IPR036638 GO:0046983
Spst3g04160 392 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 201 250 IPR011598 GO:0046983
Spst3g04160 392 Coils Coil 240 267 - -
Spst3g04160 392 PANTHER BHLH TRANSCRIPTION FACTOR 98 391 - -
Spst3g04160 392 Pfam Helix-loop-helix DNA-binding domain 205 251 IPR011598 GO:0046983
Spst3g04160 392 Coils Coil 366 386 - -
Spst3g04160 392 MobiDBLite consensus disorder prediction 171 202 - -
Spst3g04160 392 MobiDBLite consensus disorder prediction 287 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04160 Spst-Chr3 92889625 92891272 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04160 55 392 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 35.227 3.27e-54 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst3g04160 HLH 2.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04160 - - gmx:100803386 483.796
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04160 3 92889625 92891272 Spst3g04160 3 92889625 92891272 ECH
Spst3g04161 3 92906409 92908205 Spst3g04160 3 92889625 92891272 PCT