Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04156 ATGCGACTCCTCTGGTCGCTCTTCGTCTTCTTCTTCTTCCATTTTCACGTACTCAAAGCTGCGCGCATCTCAGAGTATCGGGCGCTTCTCTCTTTCAAAGCGTCTTCCATTACTGACGACCCTACCAATGCTCTCTCCTCCTGGAACTCCCCCACCCCCTACTGCTCTTGGTTCGGTGTCACGTGCGACTCGCGCCGCCACGTCACCACCCTAAACCTCACCTCCTTGTCCCTCTCCGGCACCCTCTACGATGACCTCTCCCACCTCCCTTTCCTCTCCAACCTCTCCCTCGCCGACAACAAGTTCTCCGGCCCAATCCCCGCCTCCTTCTCCGCCCTCTCCGCCCTCCGCCACCTCAATCTCTCAAACAACGTCTTCAACGCCACCTTCCCCTCCAACCTCGCACGCCTCGCCAACCTCCAAGTCCTTGACCTCTACAACAACAACATGACCGGCCCCCTCCCCCTCGCCGTCGCCGCCATGCCCCTCCTCCGCCACCTCCACCTCGGGGGCAACTTTTTCTCCGGCCAGATCCCTTCCGAGTACAGCACCTGGCAGCACCTCGAGTACCTCGCACTCTCCGGCAACGAGCTCGCCGGAAACATCCCGCCGGAGCTCGGAAACTTGACTGCACTTCGCGAGCTCTACATTGGCTACTTCAACACTTACTCCGGCGGCATCCCTCCGGAGATTGGAAACCTGTCCCAGCTTGTCCGCTTCGACGCCGCGTATTGCGGACTCTCCGGCGAAATTCCGGCTGATCTCGGAAGGCTTCAGAATATGGACACGCTGTTTCTTCAGGTGAATGCGCTATCCGGCTCCCTCACGCCTGAGCTGGGGAACCTGAAGAGCCTCAAGTCGATGGATCTGTCCAACAATATGCTCTCCGGCGAGGTTCCGGCGAGCTTTGCGGAGCTCAAGAATCTCACTCTGCTGAACCTCTTCCGAAATAAGCTCCACGGCGCGATTCCCGAGTTTGTCGGAGAGTTGCCGGCACTGGAGGTGCTGCAGCTTTGGGAGAACAATTTCACGGGAAGCATTCCTCAGAGCTTGGGAAGAAACGGAAAACTCACTCTCGTTGATCTTTCTTCGAACAAGTTAACGGGAATGCTTCCTCCTGATATGTGTTATGGGAATCGTCTCCAGACTCTGATAACTCTTGGGAATTATCTGTTCGGTCCAATTCCTGATTCTCTTGGGAAGTGTGAATCTTTGAGTAGGATTCGAATGGGGGAGAACTTTCTTAATGGTTCTATTCCAATTGGTCTCTTTGGGCTTCCGAAACTGACCCAGGTCGAGCTTCAGGACAATCTTCTCACGGGGCAGTTTCCTGAGGGTGGTTCTATTGCTATTAATCTTGGTCAGATTAGTCTCTCTAATAACAAGCTCTCTGGGCCGTTGCCACCCACCATCGGAAATTTCACCAGCATGCAGAAGCTTCTTCTCGACGGTAACAAGTTCTCGGGTCAAATCCCTCCGCAGATAGGGAGGCTCCAACAGCTTTCCAAGATTGATTTTAGCCATAACAAGTTCTCCGGACCTATTGCTCCTGAGATAAGTCGGTGCAAGCTTTTGACCTTCATTGATCTCAGCCGCAATGAGCTCTCTGGGGAGATTCCAAACCAGATAACTGCCATGCGGATATTGAATTACCTCAACGTTTCAAGAAACCATTTAGTTGGCTCCATTCCAGGGTCCATAGCTTCTATGCAAAGTTTAACTTCTGTTGATTTTTCGTACAACAATCTCTCTGGTTTGGTTCCTGGAACCGGGCAGTTTGGCTACTTTAACTACACCTCTTTCCTAGGGAACCCTGAACTCTGTGGTCCTTATTTGAGTCCTTGTAAAGACGGGGTTGCTAATGGCCCTCGTCAACCTCATGTAAAAGGCCCTCTCTCTTCTTCTTTGAAGCTTCTGTTAGTTATAGGGTTGCTTGTGTGCTCCATTGCATTTGCTGTTGCAGCAATAATCAAAGCCCGGGCTTTGAAAAAGGCTAGTGAAGCACGTGCGTGGAAATTAACTGCATTCCAGCGTTTGGACTTCACTGCTGATGATGTTTTGGACTGTTTGAAGGAGGATAACATAATAGGGAAAGGAGGTGCAGGGATTGTGTACAAAGGGGCAATGCCGAATGGGGATCAGGTTGCTGTGAAAAGGTTACCTGCCATGAGCAGAGGATCTTCCCATGACCATGGTTTCAATGCGGAGATTCAGACTTTGGGGAGGATTCGACACAGACACATTGTTAGACTGTTGGGCTTCTGTTCAAACCATGAGACGAATCTCTTGGTGTATGAGTATATGCCTAATGGAAGTTTAGGTGAGGTTCTTCATGGCAAGAAAGGTGGTCATTTGCATTGGGACACAAGGTATAAAATTGCTGTGGAGGCTGCGAAGGGCCTTTGTTATCTTCACCATGACTGTTCCCCACTCATTGTCCATCGAGATGTTAAATCCAACAATATTCTTCTTGATTCCAACTTTGAAGCACATGTTGCTGATTTTGGGCTCGCAAAGTTCCTGCAAGATTCTGGAACATCTGAATGCATGTCTGCAATTGCCGGTTCGTATGGATACATAGCTCCAGAGTATGCGTACACTTTGAAAGTTGATGAGAAAAGTGACGTGTACAGCTTTGGAGTTGTTCTTTTGGAGCTTGTAACAGGCAGGAAACCAGTAGGGGAGTTTGGAGATGGTGTAGACATTGTGCAATGGGTGAGGAAAATGACGGACTCAAACAAGGAAGGAGTTCTAAAGGTTCTTGATCCTAGACTTCCCTCAGTTCCACTCCATGAGGTGATGCATGTTTTCTATGTAGCCATGTTATGTGTTGAGGAACAGGCGGTGGAACGACCAACTATGCGTGAAGTTGTTCAAATTCTGACCGAGCTTCCAAAGCCGCCAATCTCAAAACAGGGAGACTTAACAATCACGGAGTCTTCTCTGTCATCATCGAACAGTTTAGAGTCTCCAACCACGGCATCTAAGGAACCTAAAGATAATCAACATCCTCCCCAGTCTCCACCACCTGATCTTCTTAGCATTTGA 3048 0.4993 MRLLWSLFVFFFFHFHVLKAARISEYRALLSFKASSITDDPTNALSSWNSPTPYCSWFGVTCDSRRHVTTLNLTSLSLSGTLYDDLSHLPFLSNLSLADNKFSGPIPASFSALSALRHLNLSNNVFNATFPSNLARLANLQVLDLYNNNMTGPLPLAVAAMPLLRHLHLGGNFFSGQIPSEYSTWQHLEYLALSGNELAGNIPPELGNLTALRELYIGYFNTYSGGIPPEIGNLSQLVRFDAAYCGLSGEIPADLGRLQNMDTLFLQVNALSGSLTPELGNLKSLKSMDLSNNMLSGEVPASFAELKNLTLLNLFRNKLHGAIPEFVGELPALEVLQLWENNFTGSIPQSLGRNGKLTLVDLSSNKLTGMLPPDMCYGNRLQTLITLGNYLFGPIPDSLGKCESLSRIRMGENFLNGSIPIGLFGLPKLTQVELQDNLLTGQFPEGGSIAINLGQISLSNNKLSGPLPPTIGNFTSMQKLLLDGNKFSGQIPPQIGRLQQLSKIDFSHNKFSGPIAPEISRCKLLTFIDLSRNELSGEIPNQITAMRILNYLNVSRNHLVGSIPGSIASMQSLTSVDFSYNNLSGLVPGTGQFGYFNYTSFLGNPELCGPYLSPCKDGVANGPRQPHVKGPLSSSLKLLLVIGLLVCSIAFAVAAIIKARALKKASEARAWKLTAFQRLDFTADDVLDCLKEDNIIGKGGAGIVYKGAMPNGDQVAVKRLPAMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLHWDTRYKIAVEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSNFEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVTGRKPVGEFGDGVDIVQWVRKMTDSNKEGVLKVLDPRLPSVPLHEVMHVFYVAMLCVEEQAVERPTMREVVQILTELPKPPISKQGDLTITESSLSSSNSLESPTTASKEPKDNQHPPQSPPPDLLSI 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04156 1015 SUPERFAMILY L domain-like 300 615 - -
Spst3g04156 1015 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 659 767 - -
Spst3g04156 1015 MobiDBLite consensus disorder prediction 973 1001 - -
Spst3g04156 1015 SUPERFAMILY RNI-like 71 392 - -
Spst3g04156 1015 Gene3D Ribonuclease Inhibitor 82 354 IPR032675 -
Spst3g04156 1015 Gene3D Ribonuclease Inhibitor 19 81 IPR032675 -
Spst3g04156 1015 MobiDBLite consensus disorder prediction 969 1015 - -
Spst3g04156 1015 SUPERFAMILY Protein kinase-like (PK-like) 686 961 IPR011009 -
Spst3g04156 1015 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 83 326 - -
Spst3g04156 1015 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 768 978 - -
Spst3g04156 1015 ProSiteProfiles Protein kinase domain profile. 690 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g04156 1015 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 19 82 - -
Spst3g04156 1015 Pfam Protein tyrosine and serine/threonine kinase 692 961 IPR001245 GO:0004672|GO:0006468
Spst3g04156 1015 Pfam Leucine rich repeat 116 172 IPR001611 GO:0005515
Spst3g04156 1015 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Spst3g04156 1015 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 334 619 - -
Spst3g04156 1015 SMART LRR_typ_2 282 305 IPR003591 -
Spst3g04156 1015 SMART LRR_typ_2 570 593 IPR003591 -
Spst3g04156 1015 SMART LRR_typ_2 330 354 IPR003591 -
Spst3g04156 1015 SMART LRR_typ_2 113 137 IPR003591 -
Spst3g04156 1015 SMART LRR_typ_2 474 498 IPR003591 -
Spst3g04156 1015 Gene3D Transferase(Phosphotransferase) domain 1 768 975 - -
Spst3g04156 1015 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 380 962 - -
Spst3g04156 1015 ProSitePatterns Serine/Threonine protein kinases active-site signature. 812 824 IPR008271 GO:0004672|GO:0006468
Spst3g04156 1015 Gene3D Phosphorylase Kinase; domain 1 657 767 - -
Spst3g04156 1015 Gene3D Ribonuclease Inhibitor 355 619 IPR032675 -
Spst3g04156 1015 SMART serkin_6 690 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04156 Spst-Chr3 92828952 92832543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04156 16 991 Receptor kinase-like Gene Family AT5G65700 80.366 0.0 1597
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Spst3g04156 PK_Tyr_Ser-Thr 1.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04156 - - gmx:100499646 1826.99