Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04148 ATGATGGGTCTTCATCAGGATGCTACCAACTCAGGTCTTCAGCTTATTCTAGGATTAGCTCTCACAGCCACCCCGGAAGACTCCATCACTCCGTCACCACCATCCATTTCCAACAACCCTGATCATCATCATCATCATCATCATCATCTTCCAACACTTAGGCCAAACTCCTACTCCTCTAAATCCAGTTTCGTCACTTCAAGTAACTCCGAGGCTGAGCCATCACTAACGTTGGGCCTCTCTCATGAGAGTTACCGGCAGCAGGTGGTGAAACTCCCCAGAAACATAGGACACAACAAAGTCTCCTCTGAGGACCCTCTTGAACAGACTTCACCTCACAGCGCTATCTCCTCCTTCTCCAGTGGCAGGGTCAAGAGGGAGAGGGATATTAGCTGTGAAGAAGTGGATGCAACAGAGATAGAGAGGGTTTCTTCAAGAGCCAGCGACGAAGAAGAAGACGGCCCCACCGCCAGGAAGAAACTTAGGCTTACCAAAGAACAATCCGCTTTGCTAGAAGAAAGCTTCAAACAACACAGCACGCTCAATCCTAAACAGAAGCAAGCTTTGGCGAAGCAGTTAAGTCTTCGGCCTCGACAAGTGGAAGTGTGGTTCCAGAACCGTAGAGCCAGAACAAAGCTGAAGCAGACAGAGGTGGACTGCGAGTTCCTAAAGAAGTGTTGTGAAACATTAACAGACGAGAACAGAAGGTTGCAGAAGGAGTTGCAAGAGCTGAAAGCACTGAAACTGGCTCAGCCCCTGTACATGCCTATGCCTGCGGCAACCCTCACCATGTGTCCCTCTTGTGAACGTCTCGGTGGAGGCGTCGGGGGTGGCGCTTCCCCTAAGACACCCTTCTCCATGGCTCCTAAACCTCACTTCTTCAACCCCTTCGCCAATCCTTCTGCAGCATGTTGA 915 0.5049 MMGLHQDATNSGLQLILGLALTATPEDSITPSPPSISNNPDHHHHHHHHLPTLRPNSYSSKSSFVTSSNSEAEPSLTLGLSHESYRQQVVKLPRNIGHNKVSSEDPLEQTSPHSAISSFSSGRVKRERDISCEEVDATEIERVSSRASDEEEDGPTARKKLRLTKEQSALLEESFKQHSTLNPKQKQALAKQLSLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKLAQPLYMPMPAATLTMCPSCERLGGGVGGGASPKTPFSMAPKPHFFNPFANPSAAC 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04148 304 CDD homeodomain 158 215 IPR001356 GO:0003677
Spst3g04148 304 MobiDBLite consensus disorder prediction 26 70 - -
Spst3g04148 304 SMART HOX_1 156 218 IPR001356 GO:0003677
Spst3g04148 304 Pfam Homeobox associated leucine zipper 214 248 IPR003106 GO:0006355|GO:0043565
Spst3g04148 304 MobiDBLite consensus disorder prediction 102 121 - -
Spst3g04148 304 Coils Coil 220 250 - -
Spst3g04148 304 SUPERFAMILY Homeodomain-like 148 215 IPR009057 -
Spst3g04148 304 MobiDBLite consensus disorder prediction 94 122 - -
Spst3g04148 304 Gene3D - 162 212 - -
Spst3g04148 304 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 59 277 - -
Spst3g04148 304 Pfam Homeodomain 158 212 IPR001356 GO:0003677
Spst3g04148 304 SMART halz 214 257 IPR003106 GO:0006355|GO:0043565
Spst3g04148 304 FunFam Homeobox-leucine zipper protein 18 143 219 - -
Spst3g04148 304 ProSiteProfiles 'Homeobox' domain profile. 154 214 IPR001356 GO:0003677
Spst3g04148 304 ProSitePatterns 'Homeobox' domain signature. 189 212 IPR017970 GO:0000981|GO:0006355
Spst3g04148 304 MobiDBLite consensus disorder prediction 53 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04148 Spst-Chr3 92713117 92714276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04148 2 304 Homeobox Transcription Factor Family AT4G37790 57.595 1.36e-95 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Spst3g04148 Homeodomain 2.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04148 K09338 - gmx:100807123 407.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04148 3 92713117 92714276 Spst3g04148 3 92713117 92714276 PCT