Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04130 ATGTTTCAGCCTTCTTGTAAGAGGGATGGGATCGAGGGCCAGATTCTAGATCTGGACACGGCGGTGAAAGATGGGGTTTTGGGAGGCGTAGATTCTGGGGTTGTGGGGACTGGGGTTGGTGAAAAACTGGATCTTGGGAGAATGATTGAAGAGTTGGACTTGTGTGAAGTTCCCTCTGTGTTCATTTGCCCAATTTCCCTTGAGCCAATGCAGGACCCCGTGACTCTTTGCACGGGCCAGACCTACGAGAGGTCCAACATTCTCAAATGGTTCAGTTTGGGACACTTCACTTGCCCCACCACAATGCAAGAGCTCTGGGACGATTCAATCACTCCAAATGCCACCCTCTACCGATTGATATCTACTTGGTTTTCTCAGAAGTACCTTGTGATGAAGAAGAGATCAGAAGACGTCCATGGGAGGGTGTTGGAGCTTGTTGAAACTCTCAAGAAGGTGAAGGGTCAAGCTCGTGTTCTTGCCCTGAAGGAGCTCCATCAAGTGGTGTCTGTACATGCCACTGCCCGCAAGGCATTGGTCGATGGCGATGGAGTCTCCGTGGTGTCAGCGTTGCTCGGTCCTTTCACTTCCCATGCCGTTGGCTCCGAGGTAATTGGTGTTCTTGTGAGTTTGAACCTTGATTATGAGTCCAAGAGGAATCTACTGCAGCCTGCGCGGGTTTCCTTGATGGTGGACATTTTGAATGAGGGTTCAATCGAGACAAAGATCAATTGCACGCGGCTGATTGAGACACTGATTGAGGGGAAGGATTTCCAGTTGGAAACTTTTAGGAGTCACAGTCTTTTGGTTGGGTTGATGAGGCTCGTGAAAGACAAGAGACACTCAAATGGAATCTGCCCTGGACTGAGGCTCCTCAGAACAGTGTGCTTGCATTCAGAAGTTAAGTGTTTGCTGGTAAGCATTGGGGCTATTTCTCAATTGGTTGAGTTGCTGTCTGGTTTGGAGCCCGAATGTTTGGAATTGGCTCTTTCTATTTTGGATGCATTGGCTTCTGTTCCTGAAGGCAGATTAGCCTTGAAGGATTGTTCTAATACAATACACGTTATGGTGAAACTGTTGATGAGGGTCTCAGAAAACTGCACTCAATATGCATTGTCCATTCTGTGGTCTGTGTGCAAGCTGGCCCCTGAGGAATGCTCATTGATTGCCGTGGAAGCAGGACTTGCTGCAAAACTCCTCCTTGTGATCCAGAGTGGTTGCAATCCTATATTGAAACAACAGTCTGCTGAGCTCTTGAAGTTGTGTAGTTTGAATTATTCAGATACAATCTTCATATCCAAGTGCAAACTTACTAGAACCATTCAATGA 1326 0.4736 MFQPSCKRDGIEGQILDLDTAVKDGVLGGVDSGVVGTGVGEKLDLGRMIEELDLCEVPSVFICPISLEPMQDPVTLCTGQTYERSNILKWFSLGHFTCPTTMQELWDDSITPNATLYRLISTWFSQKYLVMKKRSEDVHGRVLELVETLKKVKGQARVLALKELHQVVSVHATARKALVDGDGVSVVSALLGPFTSHAVGSEVIGVLVSLNLDYESKRNLLQPARVSLMVDILNEGSIETKINCTRLIETLIEGKDFQLETFRSHSLLVGLMRLVKDKRHSNGICPGLRLLRTVCLHSEVKCLLVSIGAISQLVELLSGLEPECLELALSILDALASVPEGRLALKDCSNTIHVMVKLLMRVSENCTQYALSILWSVCKLAPEECSLIAVEAGLAAKLLLVIQSGCNPILKQQSAELLKLCSLNYSDTIFISKCKLTRTIQ 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04130 441 Gene3D - 134 436 IPR011989 -
Spst3g04130 441 CDD RING-Ubox_PUB 58 108 IPR045210 -
Spst3g04130 441 ProSiteProfiles U-box domain profile. 56 130 IPR003613 GO:0004842|GO:0016567
Spst3g04130 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 133 IPR013083 -
Spst3g04130 441 SMART Ubox_2 60 123 IPR003613 GO:0004842|GO:0016567
Spst3g04130 441 PANTHER WDSAM1 PROTEIN 52 427 IPR045185 GO:0061630
Spst3g04130 441 SUPERFAMILY ARM repeat 227 427 IPR016024 -
Spst3g04130 441 Pfam U-box domain 57 127 IPR003613 GO:0004842|GO:0016567
Spst3g04130 441 SUPERFAMILY RING/U-box 51 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04130 Spst-Chr3 92503511 92504836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04130 1 441 U-box Gene Family AT3G49810 70.759 0.0 617
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04130 - - gmx:100781741 753.436