Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Spst3g04128 | ATGTCTCTCGAGTCCACAAGCCACCAAACTCCTGACTTGTATTGCAGTGAAGTAACTAGCGAAGTGATTCACTTGGAGGATTCTGACGAGGTTTTGAAGTTGAATTATGTTCTATGGGAAGACTCCGATGGTGATGAAAGTTGCCTATTGAGGTTATTCGAATCCGAACATGACCAAGTACAGGAATTAATAAAGTCCCCAGGACAAATTCGCAAAAAACCATGGCTGGTTAATGCTCGAGAAGAGGCCATAAATTGGATCCTAAAGGTGCATGCTTACTACAGTTTTAGACCCGAGACAGCTTATCTTTCTGTAAATTACCTGGATCGTTTCCTCAAGTCACACACCTTGACGCAAGATAAAGCATGGCCTCTGCAGCTTTTATCAGTTGCTTGTCTTTCACTAGCAGCAAAAATGGAAGAAACCAAAGTGCCACATCTTTTGGACCTACAAGTGATCGAGTCTAGGTTCCTCTTCAAGCCCAAAACAGTTCAAAGGATGGAACTTTTGGTTATGGCCAGTCTCAAGTGGCGATTGCGCACTATAACCCCTTTTGATTTTGTCCATCTTTTCATTGCCAAGCTTTCCTGCTCTACCTCCACATGGGGGGATTTAAGTTACACTGTTTCTCGTGTCTCTGAGGTTATTATCAGAACATGTCTAGTCATGGATTTCTTGGTGTTTTCACCATCCACAATAGCAGCAGCTGCACTGTTATGGGTAACTAATCACTGTGTAGATGACACGAAATCAGATTGCTTCCACAAGAATATAAACATTGAGATGGTGCAGAAATGTTACAAACTATTGAAGCAGAAACTGATCATTCGCCGATCAGAACTTTATTGGGCAAAGAGTTTGCAATTATTGCCCCGAAGTCCCACCTGTGTGCTTGATCATGCATCTATGCAAGAAAGCAGCGATGCTTACAAGCCCTGA | 939 | 0.426 | MSLESTSHQTPDLYCSEVTSEVIHLEDSDEVLKLNYVLWEDSDGDESCLLRLFESEHDQVQELIKSPGQIRKKPWLVNAREEAINWILKVHAYYSFRPETAYLSVNYLDRFLKSHTLTQDKAWPLQLLSVACLSLAAKMEETKVPHLLDLQVIESRFLFKPKTVQRMELLVMASLKWRLRTITPFDFVHLFIAKLSCSTSTWGDLSYTVSRVSEVIIRTCLVMDFLVFSPSTIAAAALLWVTNHCVDDTKSDCFHKNINIEMVQKCYKLLKQKLIIRRSELYWAKSLQLLPRSPTCVLDHASMQESSDAYKP | 312 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Spst3g04128 | 312 | SMART | Cyclin_C_2 | 182 | 307 | IPR004367 | - | |
| Spst3g04128 | 312 | SUPERFAMILY | Cyclin-like | 164 | 279 | IPR036915 | - | |
| Spst3g04128 | 312 | SMART | cyclin_7 | 85 | 173 | IPR013763 | - | |
| Spst3g04128 | 312 | Pfam | Cyclin, C-terminal domain | 182 | 274 | IPR004367 | - | |
| Spst3g04128 | 312 | CDD | CYCLIN_AtCycD-like_rpt2 | 182 | 270 | - | - | |
| Spst3g04128 | 312 | PANTHER | CYCLINS | 64 | 272 | IPR039361 | - | |
| Spst3g04128 | 312 | SUPERFAMILY | Cyclin-like | 64 | 179 | IPR036915 | - | |
| Spst3g04128 | 312 | CDD | CYCLIN_AtCycD-like_rpt1 | 79 | 177 | - | - | |
| Spst3g04128 | 312 | Gene3D | - | 78 | 180 | - | - | |
| Spst3g04128 | 312 | ProSitePatterns | Cyclins signature. | 80 | 111 | IPR006671 | - | |
| Spst3g04128 | 312 | Gene3D | - | 181 | 267 | - | - | |
| Spst3g04128 | 312 | FunFam | D6-type cyclin | 65 | 176 | - | - | |
| Spst3g04128 | 312 | Pfam | Cyclin, N-terminal domain | 72 | 179 | IPR006671 | - | |
| Spst3g04128 | 312 | FunFam | D6-type cyclin | 177 | 268 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Spst3g04128 | Spst-Chr3 | 92479896 | 92481212 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Spst3g04128 | 12 | 275 | Core Cell Cycle Gene Families | AT1G70210 | 40.000 | 4.76e-57 | 186 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Spst3g04128 | K18810 | - | gmx:100799323 | 502.671 |