Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04105 ATGAGTTGCAACGGCTGCCGAGTTCTTCGAAAGGGATGCAGCGAATCCTGTGTGTTGCGTCCCTGTTTGCAGTGGATCGAAACCGCCGAAGCTCAAGGCCACGCCACTGTCTTCGTTGCCAAATTCTTTGGCCGTGCTGACCTCATGTCCTTCGTCTCCAACGTTCCAGAAAACCAAAGACCTGCTCTGTTTCAGTCCCTGCTGTTCGAAGCGTGCGGGAGAACGGTCAACCCCGTCAACGGTGCTGTGGGCCTTCTCTGGACCGGGAACTGGCACGTCTGCCAGGCGGCGGTGGAGACCGTGCTCCGAGGAGGCACGCTTAGGCCCATGCCGGAGCTCATGGGACTCGCCGCTGCCGCTGCCGACGAGGCATCGGAAGTTGCATGCTCCGACATTTGGAGAACCCGAGACCCGAACCCGAGTTACGGCTTCACGAACTCGAGATCTCATAACAAAGTCTCTTCCGGCGGTAAACGCAAGCGGTTGGAGGAGCCAACGAAACTTCAGGCGGCGCCGAATCTTGATCTCCGGCTGACGCCGATTTTCTTACAGAAAAAGGTTGAGAGTCGGCGGCCGGTCTCGCCATCGATGACCTCCGAGGAGTCCGGCACGACGACGGCGTGCTTGGAGAGCAGATTCGGGGATCAGTGGGATCACAGTGGAGACCGGAAAGTTCTCAACCTTTTCATTTGA 693 0.5815 MSCNGCRVLRKGCSESCVLRPCLQWIETAEAQGHATVFVAKFFGRADLMSFVSNVPENQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPMPELMGLAAAAADEASEVACSDIWRTRDPNPSYGFTNSRSHNKVSSGGKRKRLEEPTKLQAAPNLDLRLTPIFLQKKVESRRPVSPSMTSEESGTTTACLESRFGDQWDHSGDRKVLNLFI 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04105 230 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 212 - -
Spst3g04105 230 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Spst3g04105 230 MobiDBLite consensus disorder prediction 140 165 - -
Spst3g04105 230 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04105 Spst-Chr3 92235881 92236661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04105 1 229 AS2 family AT3G49940 55.777 4.72e-85 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Spst3g04105 LOB 1.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04105 - - gmx:100816480 365.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04105 3 92235881 92236661 Spst3g04105 3 92235881 92236661 ECH
Spst3g04105 3 92235881 92236661 Spst10g01262 10 13381817 13383217 PCT
Spst3g04105 3 92235881 92236661 Spst3g04105 3 92235881 92236661 PCT