Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04102 ATGACGCAATTCACACCCCCACTACCTCCTTTCCACCAAATCGCACCCCTCCCAAACCCTACCATGAACAAAAACCAAATTCCTAGGACTAGGCCCTGGCCTGCAGGTTTCCCTACCTCCAAGGCTTTAACAAATTTCGGCGACGCTAACTGCATGGAACAGTTACTTGTTCACTGTGCCAACGCTATTCAAACCAACGACGTAACCCTCGCTCAGCAAATCCTTTGGGTTCTTAACAACATAGCACCCCCTGACGGTGACTCCAACCAACGTCTTGCCTCCTGCTTCCTCCGTGCCCTCACCGCACGTGCTGCCCAAACCGGTACCTGCAAGATGCTCGTCGCTGTAGCAGATCACGCCTGCACCAACCTCTCCATAGACACCCATAAATTCTCCGTCATGGAGCTTGCCAACTTCGTCGACCTAACCCCCTGGCACCGCTTCGGTTTCACTGCTGCTAACGCAGCCGTCCTCGAAGCCACTGATGGTTTCTCCGTCATCCACATCGTGGACCTAAGTCTCACGCACTGCATGCAGATTCCCACACTCATCGATGCCATCGCCAGCCGCCACGAGGTCCCTCCGCTCATCAAACTCACAGTGGCTGATGCCACCTCTAGAGACATCCCTCCTATGCTCGACCTCTCCTACGACGAACTCGGGGCCAAGTTGGTCAATTTCGCAAGGTCCAGAAATATCATCATGGAATTCAGAGCGGTTTCTTCCACTTATCAAGACGGGTTTGCGGGTTTGATCGAACAGTTAAGAGTGCAACAACAGCATTTTGTTTACTCGGCAGAACCTCGTCCCAGTGAGGCTTTGGTCATCAACTGTCACATGATGCTTCACTACATCCCTGATGAAACCCTACACGCGATTCCTGAAACTGACTTAACCTCTTTTCTTTATGATTCTTCTTCTTGTTCTGTTGGTGCTTCTTCTGTCGTTAGCATTACTTCCACTTCCTCGCTGCGATCGTTGTTTCTTAAATCCCTGCGGGGCTTAGACCCAACTGTTGTAATCTTGGTAGATGAAGATGCGGATTTGACATCCAATAACTTGGTTTGCAGGCTAAGATCTGCATTTAACTACCTATGGATACCTTACGACACTGTGGATACGTTCCTTCCACGAGGGAGTAAGCAAAGGCAGTGGTACGAAGCAGACATTTGCTGGAAGATTGAGAACGTGATAGCGCATGAAGGGGTTCAGAGAGTGGAGAGGGTTGAGCCTAAGAACAGGTGGGAGCAGCGAATGAAGAACGCGAACTTTCAAGGGGTGAATTTCAGTGAGGAGTCTATTGCGGAGGTGAAGGGCATGCTGGATGAACATGCTGCCGGGTGGGGATTGAAGAAGGAAGATGAGCACATTGTGCTCACTTGGAAAGGACACAATGTCGTCTTTGCCTCTGCTTGGTTACCTGCTTGA 1428 0.5049 MTQFTPPLPPFHQIAPLPNPTMNKNQIPRTRPWPAGFPTSKALTNFGDANCMEQLLVHCANAIQTNDVTLAQQILWVLNNIAPPDGDSNQRLASCFLRALTARAAQTGTCKMLVAVADHACTNLSIDTHKFSVMELANFVDLTPWHRFGFTAANAAVLEATDGFSVIHIVDLSLTHCMQIPTLIDAIASRHEVPPLIKLTVADATSRDIPPMLDLSYDELGAKLVNFARSRNIIMEFRAVSSTYQDGFAGLIEQLRVQQQHFVYSAEPRPSEALVINCHMMLHYIPDETLHAIPETDLTSFLYDSSSCSVGASSVVSITSTSSLRSLFLKSLRGLDPTVVILVDEDADLTSNNLVCRLRSAFNYLWIPYDTVDTFLPRGSKQRQWYEADICWKIENVIAHEGVQRVERVEPKNRWEQRMKNANFQGVNFSEESIAEVKGMLDEHAAGWGLKKEDEHIVLTWKGHNVVFASAWLPA 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04102 475 ProSiteProfiles GRAS family profile. 43 473 IPR005202 -
Spst3g04102 475 Pfam GRAS domain family 52 472 IPR005202 -
Spst3g04102 475 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 51 462 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04102 Spst-Chr3 92206265 92207692 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04102 34 474 GRAS Transcription Factor Family AT3G49950 57.303 6.03e-177 500
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Spst3g04102 GRAS 8.1e-90 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04102 - - gmx:100814364 782.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04102 3 92206265 92207692 Spst3g04102 3 92206265 92207692 ECH