Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04082 ATGTCTAAGAACCCGCAAGAGCAGCCACTGTTGGCAGACTCCTTTCAGGAAGAAGAGGAGCCGCAAGAAACTGCCTACGAATCCTCCGAGAAGATCGTCGTGGTGGGAGTCGACGAGTCCGATAGCGAGGAGAATTGGGGGAGAGTGCCTCCGTTCTCGTGGAAGAAGCTATGGCTCTTTACTGGGCCGGGCTTTCTCATGAGCATAGCGTTTCTGGACCCGGGAAACCTCGAGGGGGACCTTCAGGCCGGGGCTATTGCTGGCTACTCCCTGCTGTGGCTTTTGATGTGGGCAACGGCCATGGGCCTCTTGATTCAGCTCCTCTCGGCCCGCCTCGGCGTCGCCACCGGGAAGCACCTTGCTGAGCTCTGCAGGGAGGAGTACCCTGCGTGGGCTCGGATGGTGCTTTGGGTCATGGCTGAACTTGCTCTCATTGGCTCCGATATTCAGGAGGTTATTGGAAGCGCTATTGCTATCAGAATTCTCAGTCGTGGGGTTGTGCCCCTTTGGGCTGGGGTCGTCATCACTGCTCTTGATTGTTTTATTTTTCTCTTTCTAGAGAACTATGGTGTGAGGACATTGGAAGCCTTTTTTGCTGTTCTCATTGGTGTGATGGCAATCTCGTTTGCGTGGATGTTTGGTGAAACAAAGCCCAGTGGCAAGGAATTGCTTCTTGGCGTTTTGATTCCAAAACTCAGCTCCAGAACCATTCAACAGGCTGTTGGAGTTGTGGGGTGCCTTATTATGCCTCACAATGTGTTCTTGCACTCTGCTCTTGTTCAGTCAAGGCAGGTTGACCGCAGCAAGAAAGGCCGGGTTCAAGAAGCTCTTAATTATTTCTCTATAGAGTCCACTCTTGCCCTCGTAGTCTCCTTTATCATAAATATATTTGTCACAACAGTGTTTGCTAAGGGGTTTTATGGTACTGAATTTGCAAACAGCATTGGTCTTGTAAATGCAGGACAGTATCTTGAGGAGACATACGGGGGTGGACTGTTTCCTATTTTGTATATTTGGGGCATTGGGTTATTAGCAGCAGGTCAAAGTAGCACTATTACTGGTACTTATGCTGGACAATTCATCATGGGAGGTTTCCTAAATTTAAGATTAAAGAAGTGGATAAGGGCGTTGATTACCCGAAGTTGTGCAATTATCCCAACCATGATAGTTGCTCTTTTATTTGACACCTCAGAGGAATCGTTAGATGTTCTGAATGAGTGGCTTAATGTTCTACAGTCAGTTCAAATCCCCTTTGCACTTATTCCCTTGCTTTATCTGGTGTCAAAGGAGCAGATAATGGGCACTTTCAGAATTGGCACTGTTCTCAAGAGTGTTTTGACTTTTGGAGGGTTTACTCCACAACTTTTGTGGATCTTGGATGCATTTGGTTTCTGTACTAACCCTTCTCAAATTATGCTCGTATTCTGTTTTGATGAAGTACTGAATTGGCTTCTGATGTGGATGCAGATTACATCATGGCTTGTGGCTGCTCTGGTGATAGTGATCAATGGGTATCTTTTGACGGAATTCTTTTCCTCCGAAGTGAAGGGTCCCATGTTTGGCGCTGTAGTGGGTGCAATAACTGCTGCATATGTTGCATTTATAGTATACCTTATTTGGCGGGCCATAACCTTTGTACCTTGGCAAAGCTTAACACGACCAAAGACAATTGTTCTTTCAGAGAGTTAA 1689 0.4677 MSKNPQEQPLLADSFQEEEEPQETAYESSEKIVVVGVDESDSEENWGRVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATAMGLLIQLLSARLGVATGKHLAELCREEYPAWARMVLWVMAELALIGSDIQEVIGSAIAIRILSRGVVPLWAGVVITALDCFIFLFLENYGVRTLEAFFAVLIGVMAISFAWMFGETKPSGKELLLGVLIPKLSSRTIQQAVGVVGCLIMPHNVFLHSALVQSRQVDRSKKGRVQEALNYFSIESTLALVVSFIINIFVTTVFAKGFYGTEFANSIGLVNAGQYLEETYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWIRALITRSCAIIPTMIVALLFDTSEESLDVLNEWLNVLQSVQIPFALIPLLYLVSKEQIMGTFRIGTVLKSVLTFGGFTPQLLWILDAFGFCTNPSQIMLVFCFDEVLNWLLMWMQITSWLVAALVIVINGYLLTEFFSSEVKGPMFGAVVGAITAAYVAFIVYLIWRAITFVPWQSLTRPKTIVLSES 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04082 562 Hamap Divalent metal cation transporter MntH [mntH]. 43 511 IPR001046 GO:0016020|GO:0030001|GO:0046873
Spst3g04082 562 MobiDBLite consensus disorder prediction 1 29 - -
Spst3g04082 562 Pfam Natural resistance-associated macrophage protein 78 439 IPR001046 GO:0016020|GO:0030001|GO:0046873
Spst3g04082 562 NCBIfam Nramp family divalent metal transporter 62 431 - -
Spst3g04082 562 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 41 541 IPR001046 GO:0016020|GO:0030001|GO:0046873
Spst3g04082 562 PRINTS Natural resistance-associated macrophage protein signature 136 162 IPR001046 GO:0016020|GO:0030001|GO:0046873
Spst3g04082 562 PRINTS Natural resistance-associated macrophage protein signature 166 185 IPR001046 GO:0016020|GO:0030001|GO:0046873
Spst3g04082 562 PRINTS Natural resistance-associated macrophage protein signature 347 366 IPR001046 GO:0016020|GO:0030001|GO:0046873
Spst3g04082 562 PRINTS Natural resistance-associated macrophage protein signature 191 212 IPR001046 GO:0016020|GO:0030001|GO:0046873
Spst3g04082 562 PRINTS Natural resistance-associated macrophage protein signature 409 428 IPR001046 GO:0016020|GO:0030001|GO:0046873
Spst3g04082 562 PRINTS Natural resistance-associated macrophage protein signature 240 263 IPR001046 GO:0016020|GO:0030001|GO:0046873
Spst3g04082 562 PRINTS Natural resistance-associated macrophage protein signature 375 392 IPR001046 GO:0016020|GO:0030001|GO:0046873
Spst3g04082 562 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 55 433 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04082 Spst-Chr3 91822168 91825504 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04082 31 548 Inorganic Solute Cotransporters AT2G23150 72.361 0.0 755
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04082 K21398 - gmx:100812381 919.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04082 3 91822168 91825504 Spst3g04082 3 91822168 91825504 ECH
Spst3g04082 3 91822168 91825504 Spst3g04082 3 91822168 91825504 PCT