Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04079 ATGCAAAATAACCAAATAAACATAATGGAAGCATGCTTGAAGCCACCTAGGCTATCTAGCACTGAAGATGACTCTGTGATACTCTTTTCAACTTCTAATTCTCCTGAAGAGTCCATTAGTCATTCTTCTTCCTCTTTCCACCATTCACCGCCACCATCACTACATCAATTCAAAACTGCATATAAAGTTTCCGTGAGAAATCTCTCCTACACTTTGCACCCTCAAAAGACCACTCCCTTTTCATTTTTTCAACCGAGTCAAAAGCCAAAGCCCTTAAATATACTCAACTCAGTTTCTTTTGTTGCCAGAAGTTCTGAGATTGTTGCTGTTGTTGGTCCTAGTGGCACAGGAAAGTCTACCCTTCTGCGAATCATCGCAGGAAGGGTAAAAGGTGAAGATTTTGATCCTAAAAGTATTTCAATCAATGATCAGCCTATGACTAGTCCAGCTCAGTTGAGAAAGACATGTGGCTTTGTGGCACAAGAGGACAATTTGCTTCCTATGCTAACTGTGAGAGAAACTTTGTTGTTTAGTGCAAAGTTTAGGCTAAAAGAAATGACACCAAAAGACAGAGAGTTGAGGGTAGAAAGCTTGTTGCAAGAGCTAGGCCTGTTACATGTTGCACACAGTTTTGTTGGGGGTGAAGAGAATAGAGGGATATCTGGTGGAGAGAGGAAAAGGGTGTCAATTGGAGTTGACATGATTCACAATCCTCCCATTTTGCTCCTAGATGAGCCAACTTCAGGTCTGGACAGCACTTCAGCTTTGCAAGTCATAGAGTTACTGTCGTCAATTGTTAAAGCAAAGCAAAGGACAGTGGTTCTTTCAATCCACCAACCCAGCTATAGAATCTTGCAGTATGTTTCCAAGTTCTTGATCCTCTCTCATGGTGCAGTTGTTCATAATGGTAGCCTTGAACAACTAGAGGGAACCATAAGTAAACTGGGATTTCTAATTCCAACACAACTGAATGCTTTAGAATTCTCCATGGAAATTATACAAGGGTTGGAAGATTCTATTTCCAAATATGACACTTGCCCCATTGAGGAAAAGGAGCCATTTCCAAACCTCATGTGGTCAGAGGACGAAAACCGTGGAGTCCAAATTCTCCAATCACAATGTACCAAGGAAATTTTTGGCAGTCTTTGTTATGCATACTTGATAGAGATTTTGTTTCTGTGCTTAAGATTTTGGAAGATCATTTATAGAACAAAGCAACTTTTCTTGGCCAGAACAATGCAAGCACTAGTTGGTGGCTTTGGTCTAGGAAGTGTTTATATAAAGGTAACAAGGGATGAAGGAGGAGTTGCGGAAAGGTTAGGTCTATTTGCATTTAGTCTAAGTTTTCTCCTCTCTTCAACAGTTGAAGCACTTCCAATATACCTTCAAGAGAGGAGTGTTTTGATGAAAGAAGCCTCAAGGGGAGCCTATAGGATTTCCTCTTACATGATAGCCAACACGTTTGTTTTCCTTCCTTTCTTGTTTGTGGTATCCACACTTTTTGCTGTTCCTGTATATTGGCTTGTAGGACTCAATCCTTCCCTTTCTGCCTTCACCTTTTTCACCTTTGTGGTGTGGCTCATTGTGCTCATGGCAAGTTCTCTAGTGCTCTTCTTAAGTGCAGTCGCTCCTGATTTCATTTCAGGAAACTCCCTCATCTGCACAGTTCTTGGAGCATTCTTTCTCTTCTCAGGATACTTCATTCCAAAGGAGAGCATCCCAAAGTATTGGCTTTTCATGTACTATGTGTCCCTCTATAGGTACCCTTTGGATGCACTCCTCACAAATGAGTACTGGAATGTTAGAAATGAGTGTTTCTCACATCAAATAGAGGGATCACAGTGCTTGATCACAGGGTTTGATGTGTTGAAGAGTAGAGGACTCGAAAGGGATAACAGGTGGATCAATGTGGGAATAATGCTGGGATTCTTTGTGTTGTATCGTGTGCTTTGTTGGATAATTCTTGCAAGAAAGGCCTCTAAGACAACAATATAA 1995 0.4105 MQNNQINIMEACLKPPRLSSTEDDSVILFSTSNSPEESISHSSSSFHHSPPPSLHQFKTAYKVSVRNLSYTLHPQKTTPFSFFQPSQKPKPLNILNSVSFVARSSEIVAVVGPSGTGKSTLLRIIAGRVKGEDFDPKSISINDQPMTSPAQLRKTCGFVAQEDNLLPMLTVRETLLFSAKFRLKEMTPKDRELRVESLLQELGLLHVAHSFVGGEENRGISGGERKRVSIGVDMIHNPPILLLDEPTSGLDSTSALQVIELLSSIVKAKQRTVVLSIHQPSYRILQYVSKFLILSHGAVVHNGSLEQLEGTISKLGFLIPTQLNALEFSMEIIQGLEDSISKYDTCPIEEKEPFPNLMWSEDENRGVQILQSQCTKEIFGSLCYAYLIEILFLCLRFWKIIYRTKQLFLARTMQALVGGFGLGSVYIKVTRDEGGVAERLGLFAFSLSFLLSSTVEALPIYLQERSVLMKEASRGAYRISSYMIANTFVFLPFLFVVSTLFAVPVYWLVGLNPSLSAFTFFTFVVWLIVLMASSLVLFLSAVAPDFISGNSLICTVLGAFFLFSGYFIPKESIPKYWLFMYYVSLYRYPLDALLTNEYWNVRNECFSHQIEGSQCLITGFDVLKSRGLERDNRWINVGIMLGFFVLYRVLCWIILARKASKTTI 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04079 664 Pfam ABC transporter 95 248 IPR003439 GO:0005524
Spst3g04079 664 Pfam ABC-2 type transporter 278 341 IPR043926 GO:0140359
Spst3g04079 664 ProSitePatterns ABC transporters family signature. 220 234 IPR017871 GO:0005524|GO:0016887
Spst3g04079 664 SMART AAA_5 104 313 IPR003593 GO:0016887
Spst3g04079 664 Gene3D - 63 326 IPR027417 -
Spst3g04079 664 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 63 321 IPR003439 GO:0005524
Spst3g04079 664 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 92 315 IPR027417 -
Spst3g04079 664 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 34 649 - -
Spst3g04079 664 Pfam ABC-2 type transporter 390 598 IPR013525 GO:0016020|GO:0140359
Spst3g04079 664 FunFam ABC transporter G family member 23 86 319 - -
Spst3g04079 664 MobiDBLite consensus disorder prediction 32 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04079 Spst-Chr3 91774819 91776992 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04079 76 330 Calmodulin-binding Proteins AT2G36910 29.520 1.78e-15 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04079 K05681 - gmx:100783883 1134.01