Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04066 ATGGTTGATGTTAGAGAGTTGAAAGAAAATAATCCAGATTTTGCCCTTGTTCTGGATACCAAGGATGATAAACTCCCCAATACATTTGACTTGGCATACAAGAGGGTTCCCGTGCATGATGTAACTGTAGGATCATATATTCTGGTTGGTGCCGGCGAGTCTGTGCCAGTAGACTGTGAAGTATTCCAAGGCAATGCAACAATTACCATAGAGCACTTGACAGGGGAAGTGAAACCTTTGGAAGCCAAAGTTGGGGATAGAATTCCTGGTGGTGCAAGGAACTTAGATGGGAGGATAATTGTGAAGGTAACAAAAACATGGAAGGAATCAACTCTCAGCAAAATTGTTCAGTTGACTGAAGAAGCACAGTCAAATAAACCAAAACTTCAAAGGTGGTTGGATGACTTTGGTGAACGTTATAGCCAAGTTGTTGTGGTGCTATCAATTGCAATTGCTGTTATTGGGCCACTTCTATTTAAGTGGCCATTCATTAGTACATCTGCTTGCAGAGGTTCAATTTACAGAGCGTTAGGGCTTATGGTGGCAGCATCACCTTGTGCCTTGGCTGTGGCCCCATTGGCATATGCTATAGCAATCAGTTCCTGTGCCAAAAAGGTCAAGTTGGTGGTTTGCGGTGCTCAACAAAAAGCAAAAAACAACAAACCCACCCCAGCTATGTTTCATTGGATTGAGTCTTGCATTAGACCAATCTCAACCCAAGGGATATTACTCAAAGGTGGGCATGTTCTTGACGCTCTAGCTTCTTGTCGTACTATTGCATTTGACAAAACAGGGACATTGACAACTGGTGGACTTGTATTCAAGGCAATTGAGCCCATTTATGGTCATCATGTTAGAAACAATGAATCAAATGTTTCTTCTTGTTGCATTCCCACCTGTGAAAAAGAAGCTCTTGCTGTTGCTGCAGCTATGGAAAAGGGTACTACACACCCTATTGGAAGGGCTGTGGTTGACCATAGTGAAGGCAAAGACCTCCCATCCGTTTCAGTTGAAAGTTTTGAATACTTTCCTGGTAGAGGCCTTACAGCTACTGTTAACAACATTGAGTCAGGAACTGGAGGTGCCAAACTGTTAAAAGCATCACTTGGATCTATAGATTTCGTCACTTCTTTTTGTCAATCTGAAGACGAGTCAGAAAAGATCAAGGAAGCAGTTAATACATCTTCTTATGGAAGTGAATATGTTCATGCTGCCCTTTCAGTTAATCAGAAGGTAACATTGATTCATCTAGAGGATAGGCCTCGTCCTGGGGTTTTTAATGTTATTCAAGAATTGCAAGATGAAGCAAAATTTCGTGTGATGATGTTAACCGGTGATCATGAGTCTAGTGCAAGGAGAGTTGCAAGTGCTGTGGGCATCAATGAGTTTCATTGCAACCTAAAGCCTGAAGATAAGTTGAGTCATGTGAAGGATTCTTCAAGAGAGATGGGAGGAGGCTTAATTATGGTGGGTGAAGGCATAAATGATGCCCCAGCACTAGCTGCGGCAACTGTTGGGATAGTTCTTGCTCACCGTGCTAGTGCAACGGCCATAGCTGTTGCAGATGTATTGTTGCTCAGAGAAAATATTTCTGCAGTGCCATTTTGTATTGCCAAGTCTCGCCAGACAACTTCACTGATTAAACAAAATGTGGCTTTAGCATTGACGTCCATTGTTATGGCTTCCCTTCCATCAGTTATGGGATTTCTGCCATTGTGGTTAACGGTTCTTTTACATGAAGGTGGAACCCTGCTTGTCTGTCTCAATTCCGTACGTGCTCTCAATGAACCATCTTGGTCATGGAAACATGATATCTTATATTTGATGAGCCAGATTAAATCTAGACTTCTGTCTCTCAAGACAAATATCATGGGCTCAAACAGTATCATAACGGCGAATTTGTAA 1905 0.422 MVDVRELKENNPDFALVLDTKDDKLPNTFDLAYKRVPVHDVTVGSYILVGAGESVPVDCEVFQGNATITIEHLTGEVKPLEAKVGDRIPGGARNLDGRIIVKVTKTWKESTLSKIVQLTEEAQSNKPKLQRWLDDFGERYSQVVVVLSIAIAVIGPLLFKWPFISTSACRGSIYRALGLMVAASPCALAVAPLAYAIAISSCAKKVKLVVCGAQQKAKNNKPTPAMFHWIESCIRPISTQGILLKGGHVLDALASCRTIAFDKTGTLTTGGLVFKAIEPIYGHHVRNNESNVSSCCIPTCEKEALAVAAAMEKGTTHPIGRAVVDHSEGKDLPSVSVESFEYFPGRGLTATVNNIESGTGGAKLLKASLGSIDFVTSFCQSEDESEKIKEAVNTSSYGSEYVHAALSVNQKVTLIHLEDRPRPGVFNVIQELQDEAKFRVMMLTGDHESSARRVASAVGINEFHCNLKPEDKLSHVKDSSREMGGGLIMVGEGINDAPALAAATVGIVLAHRASATAIAVADVLLLRENISAVPFCIAKSRQTTSLIKQNVALALTSIVMASLPSVMGFLPLWLTVLLHEGGTLLVCLNSVRALNEPSWSWKHDILYLMSQIKSRLLSLKTNIMGSNSIITANL 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04066 634 SFLD p-type atpase 242 543 IPR044492 -
Spst3g04066 634 Gene3D - 2 123 - -
Spst3g04066 634 Pfam haloacid dehalogenase-like hydrolase 257 503 - -
Spst3g04066 634 Gene3D - 253 541 IPR023214 -
Spst3g04066 634 Gene3D - 271 421 IPR023299 GO:0000166
Spst3g04066 634 SUPERFAMILY Calcium ATPase, transduction domain A 33 118 IPR008250 -
Spst3g04066 634 SUPERFAMILY HAD-like 258 590 IPR036412 -
Spst3g04066 634 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 234 625 - -
Spst3g04066 634 PRINTS P-type cation-transporting ATPase superfamily signature 490 509 - -
Spst3g04066 634 PRINTS P-type cation-transporting ATPase superfamily signature 69 83 - -
Spst3g04066 634 PRINTS P-type cation-transporting ATPase superfamily signature 260 274 - -
Spst3g04066 634 PRINTS P-type cation-transporting ATPase superfamily signature 436 446 - -
Spst3g04066 634 PRINTS P-type cation-transporting ATPase superfamily signature 514 526 - -
Spst3g04066 634 PRINTS P-type cation-transporting ATPase superfamily signature 413 424 - -
Spst3g04066 634 ProSitePatterns E1-E2 ATPases phosphorylation site. 262 268 IPR018303 -
Spst3g04066 634 Pfam E1-E2 ATPase 33 205 - -
Spst3g04066 634 NCBIfam HAD-IC family P-type ATPase 33 196 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst3g04066 634 NCBIfam HAD-IC family P-type ATPase 389 570 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst3g04066 634 SFLD C1.7: P-type atpase like 242 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04066 Spst-Chr3 91598823 91624228 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04066 1 615 Primary Pumps ATPases AT4G37270 73.496 0.0 902
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04066 K01534 - gmx:100776309 1088.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04066 3 91598823 91624228 Spst3g04066 3 91598823 91624228 ECH