Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04058 ATGTTGGCAGCACAGAGGCTAGTTCAAGTAACTCTGCAGCATCCATTATATCCATTAGATTATTCATTTCCGTTAATTGATGAGGGGTGGTTGATTGTAAACCTTAAAAACAAATCCAAGGTGATGAAGTCTACTTCAATGGTTGCTTTAGATTGTGAAATGGTTCTTTGTGAAGATGGGACTGATGCAGTAGTTAAAGTCTGTGCGGTAGACCATAATTTAGAGGTCAAACTAGATGAATTTGTAAAGCCTGACGTAAAAATTGTAGACTACAGAACAGAGATCACTGGTATCACTTCTCAAGATCTAGAGGGAGTGACTTGCTCTTTGGCTGATGTGCAGAAATCCATGAAGAAGTTGTTATCAAATGGAACCATATTAGTGGGACACAGTTTGCATAATGATCTCCGTGTGCTGAAGCTTGATTATGTCAGAGTCATTGACACTTCCTATATCTTCCAATCCTTGGATGGATCTAACAGGAGGCCTTCTTTGAATAGTTTATGTCAGGCTGTGTTGGGTTGTGAAGTTCGAGAAAAAGGTGCTACACATATATGTCTAGATGATGCACGTGCAGCTATGAACCTCGTTCTTGCAAAGATCAAACATGGTGTTGATAAGGAATTTCCAATTTCATTGGTTCAAGAGCATGATGCAAAAATTGATATGGCAAAGCTTTTTATTCACAAGATACCAAACGTTTTAAACATTGAAACACTGCATGAAATTGTTCCTGGAGAATTCAAAACAGAACTGCAGGCTTCCAAGAAAGCTCAAGGAAGACATTATTCTGCCTTAGCTGTTTTTAAAAGTCCACAAGAGGCGGATGATGCCTATGAAAATGTCGAAGGAAGCGAATCAAAGGATACATATGGACGTCCACAGAAATTTGTAAAATTTCGTCAAAGTACTGGCTGGTTTGTCACTCTATTTGTTCGGAAAATGGTAACTGATGAATCCAAGGACCGGACTCAATCTACTAAGAGGGCTTTACAAACGGATGAGGCGGTTGATGTTTCAAAGAAACCAAAGATAGATAAAAAAATTGAAGAGGATGCGCCAGCAGGCCTTAACAAGTGTGACAGTGATTCCCATTTAAAAGAGATTGAAGCACTGAATCAACGATTAAAGCATTTATATGAGATTGAAGCACTGAATCAACGATTAAAGCAAAGTGAATTGGAGATTGAATCATTGAGGAAACAGCTTACACAAAAAGATTTTGAAATATCCTTGCTGAATAAAATGATATCCTCCTTAGATAAGCGAAAGAAGTTAAAAATGTAG 1287 0.38 MLAAQRLVQVTLQHPLYPLDYSFPLIDEGWLIVNLKNKSKVMKSTSMVALDCEMVLCEDGTDAVVKVCAVDHNLEVKLDEFVKPDVKIVDYRTEITGITSQDLEGVTCSLADVQKSMKKLLSNGTILVGHSLHNDLRVLKLDYVRVIDTSYIFQSLDGSNRRPSLNSLCQAVLGCEVREKGATHICLDDARAAMNLVLAKIKHGVDKEFPISLVQEHDAKIDMAKLFIHKIPNVLNIETLHEIVPGEFKTELQASKKAQGRHYSALAVFKSPQEADDAYENVEGSESKDTYGRPQKFVKFRQSTGWFVTLFVRKMVTDESKDRTQSTKRALQTDEAVDVSKKPKIDKKIEEDAPAGLNKCDSDSHLKEIEALNQRLKHLYEIEALNQRLKQSELEIESLRKQLTQKDFEISLLNKMISSLDKRKKLKM 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04058 428 Coils Coil 382 409 - -
Spst3g04058 428 Pfam Exonuclease 48 196 IPR013520 -
Spst3g04058 428 FunFam Small RNA degrading nuclease 3 42 215 - -
Spst3g04058 428 CDD REX1_like 48 198 IPR034922 -
Spst3g04058 428 SUPERFAMILY Ribonuclease H-like 47 202 IPR012337 -
Spst3g04058 428 Gene3D - 42 221 IPR036397 GO:0003676
Spst3g04058 428 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 43 212 IPR047021 GO:0004527
Spst3g04058 428 SMART exoiiiendus 46 206 IPR013520 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04058 Spst-Chr3 91500371 91502980 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04058 33 177 C2H2 Transcription Factor Family AT5G40310 31.928 7.03e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04058 K14570 - gmx:100785565 603.208