Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04053 ATGGCCGTGGAGCTCATGACGGGTTACTCAACAACCAACACTTTCACGACCAAAGCCGAGGAAAATGCCGTCCAGGAAGCCGCCTCCGGACTAGAGAGCGTCGAGAAGCTCATCAGACTCCTCTCTCAGACCCCCCAACAATACAACTCCTCCAATGAAATCGCCATGGACTGCAAGGCCGTCGCTGACCTCGCAGTTTCCAAGTTCAGAAACGTCATTTCGCTCCTCGCCCCAACCCCAACCCCAACCGGCCACGCCCGCTTCCGACGAGCCCCTCTCCCTCCTCCTCCTCCTACCCAACCCTCCCAACCTACCGTCTTCCACGCCACTCCTTTGCAACACATCCCACCCACCCTCAACCAAATCCCCAAAACAGACAACACCCTCAACGACCCCTCTTCCAAAACCATTCATTTCTCCTACCCCTCCCCCGCCACTTCCTTCATCTCCTCCCTCACCGCCGACGCCCACACCAAACAACCTTCCTCCTCCTCGCCGCCCCAACCTGCGCCAGGGACTTTCCACATCTCCACTCTCTCCCACGTCTCGTCCGCGGGGAAGCCTCCGCTCTCCTCCTCCTCCTCTTTCAAGAGGAAGTGCAGCTCTGAGAACTTGGCTTCTGGAAAGTGCGGTAGCTCCTCTAGCCGCTGTCATTGTTCCAAAAAGAGTAGGAAAATGAGGTTGAGGAGGGTTGTTAGGGTACCAGCTATTAGCTTGAAGATGGCTGATATTCCACCAGATGATTATTCCTGGAGGAAGTATGGACAGAAACCAATTAAAGGATCCCCTCATCCAAGGGGTTACTACAAGTGCAGTAGCGTCAGAGGGTGTCCAGCGCGAAAGCATGTGGAGCGAGCTTTGGATGATCCAGCTATGCTGGTGGTAACATACGAGGGGGAGCATAATCACACACTCTCTGCGGCTGATGCTACTAACCTTATTCTTGAATCATCTTGA 957 0.5475 MAVELMTGYSTTNTFTTKAEENAVQEAASGLESVEKLIRLLSQTPQQYNSSNEIAMDCKAVADLAVSKFRNVISLLAPTPTPTGHARFRRAPLPPPPPTQPSQPTVFHATPLQHIPPTLNQIPKTDNTLNDPSSKTIHFSYPSPATSFISSLTADAHTKQPSSSSPPQPAPGTFHISTLSHVSSAGKPPLSSSSSFKRKCSSENLASGKCGSSSSRCHCSKKSRKMRLRRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPAMLVVTYEGEHNHTLSAADATNLILESS 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04053 318 MobiDBLite consensus disorder prediction 105 137 - -
Spst3g04053 318 SUPERFAMILY WRKY DNA-binding domain 242 305 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst3g04053 318 MobiDBLite consensus disorder prediction 89 104 - -
Spst3g04053 318 SMART WRKY_cls 245 305 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst3g04053 318 Pfam WRKY DNA -binding domain 247 303 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst3g04053 318 Pfam Plant zinc cluster domain 197 243 IPR018872 -
Spst3g04053 318 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 24 311 IPR044810 GO:0003700
Spst3g04053 318 MobiDBLite consensus disorder prediction 154 197 - -
Spst3g04053 318 MobiDBLite consensus disorder prediction 80 137 - -
Spst3g04053 318 Gene3D WRKY domain 232 306 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst3g04053 318 ProSiteProfiles WRKY domain profile. 240 306 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst3g04053 318 FunFam WRKY transcription factor 65 229 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04053 Spst-Chr3 91470612 91471937 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04053 20 303 WRKY Transcription Factor Family AT2G24570 46.104 2.60e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Spst3g04053 WRKY 4.4e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04053 - - gmx:100170685 435.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04053 3 91470612 91471937 Spst3g04053 3 91470612 91471937 ECH
Spst3g04053 3 91470612 91471937 Spst3g03436 3 84124964 84126199 PCT
Spst3g04053 3 91470612 91471937 Spst3g04053 3 91470612 91471937 PCT