Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04044 ATGGTTCAAGCAGGCGACAACCTCGGCTCAGTGTCTCTGTACTGCAAAACCCCAATACCCTTTCACGCACCAATTATTTTTTTAATTTATTTATGCTTTTTATCAAGATTCACCCTCTGCCCCTTTGATTTCCATTTCACACGCGGAGAAAGAGAGGGAAAGGGTGGTGCTTCATTCTTTGCAGACGTAGCTATGGAACGAGGTGAGGGAGGGAGCACGAGGCAAACAGGGAAAGAGGGTGAGACCACGCGCTACAAAGGAATCAGGATGAGGAAGTGGGGCAAGTGGGTCGCTGAGATTCGAGAACCCAACAAGCGTTCACGGATTTGGCTCGGTTCCTATTCTACACCAGTCGCAGCGGCGCGTGCTTACGACACCGCCGTCTTCTATCTCCGAGGACCCTCCGCCCGCCTCAATTTTCCTGACCTTATCGCCGTTGACGGTCCTACCGCCGCAGCTTCGGACATGTCCGCCGCCTCCATCAGGAAGAAGGCCACCGAGGTCGGCGCCAGAGTCGACGCGCTCCACCGCCAGCACCCACATGCCCCCTTGGCCGGAGAATTTGTGGACCGAGTCGACCTCAATAAGACACCAGAACCTGAAAATTCGGATTGTGACTGGGACGGGGATTAG 633 0.545 MVQAGDNLGSVSLYCKTPIPFHAPIIFLIYLCFLSRFTLCPFDFHFTRGEREGKGGASFFADVAMERGEGGSTRQTGKEGETTRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPDLIAVDGPTAAASDMSAASIRKKATEVGARVDALHRQHPHAPLAGEFVDRVDLNKTPEPENSDCDWDGD 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04044 210 Gene3D AP2/ERF domain 83 142 IPR036955 GO:0003700|GO:0006355
Spst3g04044 210 ProSiteProfiles AP2/ERF domain profile. 84 141 IPR001471 GO:0003700|GO:0006355
Spst3g04044 210 Pfam AP2 domain 83 133 IPR001471 GO:0003700|GO:0006355
Spst3g04044 210 CDD AP2 83 143 IPR001471 GO:0003700|GO:0006355
Spst3g04044 210 SMART rav1_2 84 147 IPR001471 GO:0003700|GO:0006355
Spst3g04044 210 FunFam Ethylene-responsive transcription factor 2 83 142 - -
Spst3g04044 210 PRINTS Ethylene responsive element binding protein signature 85 96 IPR001471 GO:0003700|GO:0006355
Spst3g04044 210 PRINTS Ethylene responsive element binding protein signature 123 143 IPR001471 GO:0003700|GO:0006355
Spst3g04044 210 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 73 204 - -
Spst3g04044 210 SUPERFAMILY DNA-binding domain 84 142 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04044 Spst-Chr3 91286051 91286683 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04044 69 208 AP2-EREBP Transcription Factor Family AT5G67190 52.747 7.90e-53 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst3g04044 AP2 6.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04044 K09286 - gmx:100789373 250.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04044 3 91286051 91286683 Spst3g04044 3 91286051 91286683 ECH
Spst3g04044 3 91286051 91286683 Spst3g04044 3 91286051 91286683 PCT