Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04032 ATGAGTTCAATGGAAAGTGGCTCATCTGGACAAGCTAACGGAAACAGCCATTATGAGGAAGGGTTCTTTGATGGGTTTCCTCACCCTGAAGTGGATCTCCCTCAAGAAAGTGCCAACAATCGCCTTAGCACTGCTCCTCTTCATGAAGCTCCTAATGTTGAAGGGTTTCTCCAGCCAGTAGTGAATCTCCCTCAACAAGGTGACAACAATCGTCTCAGCACTGCTCCTCCTCAAGAAGCTCCTAATGTTGATGTTCAGCCAGTACTGAATCTCCCTCAACAAGATGACAACAACAATGGTACCAGTTCTGATGTTCTGCTTCATCAAACCCCTGTAGCACCGGATTCTAACATTACCTCTTCAAACTCCCTTGCTGGAAGCAACTCGAACACAGTGAACATTCCAAGAAAAAGAAGCTTTCCTGACCATGCTTCTGGAAATTTTCATCGGGGTGAAAGTTCAAGCATGGGTCAACAACACAGTGGAGAGGATAAAAGGCTTGCTACTGAGTCTGAGGTGAGAGCTAACAACAATGTGAACCCACCCAATGCAGGAGCACCTATTCCACCAAACAATGCAGGAGCACCTATTCGCCAACGCAATGGAGGGGTACCTGTTCGGCCACGCATTGCACGGGCACCTATTCGGCCACGCATTGCACGGACACCTATTTCAATGCAGAATGCAGGAGCACCTATTCGACCACCCAATACGCGTGCTAATGGAAACGCTAATACTAATATTGGGAGAAACGCTTCTCATGCTGTGATACCAAGCCAAGCGAGTTTGTATTTCAACGGAGCCCGTCAGCCTTCTCACCCATGCTTTCGTCCCGTTCAGCCTATAACTTTTCAGGCTAGTTCATTCATGTCCAGTGCTACCCCCACTGTTAACAACATAATCGTGAGGACTATTCCTGACTCAAGATCATCCCCTTGCCCACATCCTAGGTTCGATATTGTAATTCCATTTTATGAACATCCTAGCACTTCAACATGGGCTCCGCCACAGGCCTCACCAGGAATGAACCATTCTGCCGGAGCAAATAGTTCTGGCACTCAGAACCATCAGAGTCCTCAGCAAACATCAGCATCTGCAACTCCACCCAATGTTGTTTCTGCTGAAACGAGAAGAAGTCTTCCACCTCAGGTCCAAACTATCGTGGATTCTCTAAGCCATGGTCGCGGTCTAATATTCGAGGTAGATTTTCGCACAAATACGTTTGAGCAGATACAGAGCCCTGAACCATCTACGGGACTGAGTCTGGAAACGATCATGCAGCGCATGGAGAGTGAGACTTATCAGGATGTTCGTGGAGATCATCCAGAAGGAAATACAGAAAGATGCCCCGTCTGTGTGGAAAAATTTGAAAACGGATCGCAAATCGGGAAGCTGCATTCATGTGAGCACAAGTTTCACTTTGATTGCATCAAACAGTGGCTCCTGCAGAAAAACATTTGTCCAGTTTGCAGAAGAGTTGCGGTTCAAGTCTTAAAGATATACACAGTTGAGGTACAGAGTGTGAGAAATTGCGTGACACAAAGCTCTCAACTTTCACTGCTGTTCAGTGCCCTTATTTCAGCAGATCCAGTGGGTGGCTCAGCTGGACATGATAATGCAAACAACCAAAATGAATCCAGCCCTCACCTTTCAATTGAAACCTTGGAGAGGTTGCTTCCTTTATTTCCCCGCATTTCTACTGAGGAAGGGTTTCCTCAGCCAGAACTGAATCTCCCTCAACACGGTGCCAACAACAGTGGTACCAGAACTAATGTTCCAATTCATGAAACCCCTTTTATAGCGCCGGAATCAAACCTTTTCTCTTCAAGCTCCTTTTTTGGAACTCCTCCAAATCGTTCGGAAAATGTAGATTTGTCTCTGAATTTTGGCTTAAGCCGTCAGGGTGCAACAATATCTTCTGCTGTGATTCCAAGTTCAAATGTTGCACCTAGCGTGCATGGAAGCAACTCAAACTCAGTGAACATTCCCAGAAAAAGGAGTTTCCCTGATCATGTTTCTCGAGAATTTCATCAAGGTGAAAGTTCAAACATGGGTCAAGAAACTGGAGAAATCAAGAGAGCTGCTACCGAGTCTCACGTGATAGCTAACAATAATATGAACTCATCACCACCATCATTTTCTCTTATGCAACAACAACATCAATTCCTACGTGATGACCATGCTAATCCAAATAATGCAATAACAACTGTCCCTCCACCCATTACGCGAGCTAACAGGATCACTAATAATGAAAGAAGAGATTATCATGGTCTGATACCAAGCGAAGCGAGTTCGTACTTCAATGGAGGCTCAACACATTCCCTACAGTCTCCTCTTCAATCTTCTTCACATGCCCTGATACTAAGCGAAGCAAGTTTACATTTCAATGGAGGCTCAACAGATTCCGTACATACTTCTCTCCAATCTTCACATTCGGTTCATCCTCTTTCTTTTCATAGTTGGTCATTCATGTCAAATTCTAGCTCCAATGTTAACATTATAAGCATGAGAAATGCTCCTCACTCAATTTCTTCCCCATGTCCACATGCTGGAGGGGATACCATGATTCCATTTTATGAAAACGGAAACAACATGGTTGGTCCCCTTCTTACGTCTATGGGTAATTTTCCCACTTATCGACCAAACAGGTCTTACGTTGATACTAATTCTGATACTGATCGTGAGACTGCTAGAAGGGCTCTTTCTTTTGTTCTCCCACATCAGTTTGAACCCTCGGAATCGGAAACACTGGAATTACTACCTGGAATTGTGGGCAATTTGGGTAGAGTTCGTAATGCTCAAGCGAATACGTACTACCCTCTGAGTGATCATGCTAGCTCTTCAACTTGGGTTCCTCCACAAGGCTCACGAGGAATGCACCATTCTGATGCAGCAAGTGGCACCTCGAACCACCATAGTCTTGGGGAAATACCACCATTTCCTTCTCTTGAAACGTTAAGAGCGTTTCCATCTGAGTTTCAATCGCTCCTGCATTCTCTCAGAGATGGTCGTGGTCTAATGCTCGAGCAGATAGAGAACCCCGAAATATTTGAGATGTCGCCACCATCCACGGGACTGAGTCAGGAAATGATCGCGCAGCACATGGAGCGTGAGACTTTCCTGGTTGTTGATGAAGATAATCCAGAAGAAGATCAAGAAAAATGCCCCGTCTGTCTGGAAGAATATGCCAACGGAGAGGATATCGGGAAGCTGCATTCATGTGTGCACAAGTTTCACTTTCATTGCATCAAACAGTGGCTAATGCAGAAGAATCTTTGTCCCGTCTGCAGAAGAACTGCATTAGACATGATTATATTTGAATAA 3324 0.4507 MSSMESGSSGQANGNSHYEEGFFDGFPHPEVDLPQESANNRLSTAPLHEAPNVEGFLQPVVNLPQQGDNNRLSTAPPQEAPNVDVQPVLNLPQQDDNNNGTSSDVLLHQTPVAPDSNITSSNSLAGSNSNTVNIPRKRSFPDHASGNFHRGESSSMGQQHSGEDKRLATESEVRANNNVNPPNAGAPIPPNNAGAPIRQRNGGVPVRPRIARAPIRPRIARTPISMQNAGAPIRPPNTRANGNANTNIGRNASHAVIPSQASLYFNGARQPSHPCFRPVQPITFQASSFMSSATPTVNNIIVRTIPDSRSSPCPHPRFDIVIPFYEHPSTSTWAPPQASPGMNHSAGANSSGTQNHQSPQQTSASATPPNVVSAETRRSLPPQVQTIVDSLSHGRGLIFEVDFRTNTFEQIQSPEPSTGLSLETIMQRMESETYQDVRGDHPEGNTERCPVCVEKFENGSQIGKLHSCEHKFHFDCIKQWLLQKNICPVCRRVAVQVLKIYTVEVQSVRNCVTQSSQLSLLFSALISADPVGGSAGHDNANNQNESSPHLSIETLERLLPLFPRISTEEGFPQPELNLPQHGANNSGTRTNVPIHETPFIAPESNLFSSSSFFGTPPNRSENVDLSLNFGLSRQGATISSAVIPSSNVAPSVHGSNSNSVNIPRKRSFPDHVSREFHQGESSNMGQETGEIKRAATESHVIANNNMNSSPPSFSLMQQQHQFLRDDHANPNNAITTVPPPITRANRITNNERRDYHGLIPSEASSYFNGGSTHSLQSPLQSSSHALILSEASLHFNGGSTDSVHTSLQSSHSVHPLSFHSWSFMSNSSSNVNIISMRNAPHSISSPCPHAGGDTMIPFYENGNNMVGPLLTSMGNFPTYRPNRSYVDTNSDTDRETARRALSFVLPHQFEPSESETLELLPGIVGNLGRVRNAQANTYYPLSDHASSSTWVPPQGSRGMHHSDAASGTSNHHSLGEIPPFPSLETLRAFPSEFQSLLHSLRDGRGLMLEQIENPEIFEMSPPSTGLSQEMIAQHMERETFLVVDEDNPEEDQEKCPVCLEEYANGEDIGKLHSCVHKFHFHCIKQWLMQKNLCPVCRRTALDMIIFE 1107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04032 1107 MobiDBLite consensus disorder prediction 942 973 - -
Spst3g04032 1107 SUPERFAMILY RING/U-box 448 498 - -
Spst3g04032 1107 ProSiteProfiles Zinc finger RING-type profile. 1055 1097 IPR001841 -
Spst3g04032 1107 Pfam Ring finger domain 448 491 IPR001841 -
Spst3g04032 1107 Pfam Ring finger domain 1054 1097 IPR001841 -
Spst3g04032 1107 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 644 1101 IPR045191 GO:0061630
Spst3g04032 1107 MobiDBLite consensus disorder prediction 329 383 - -
Spst3g04032 1107 MobiDBLite consensus disorder prediction 112 204 - -
Spst3g04032 1107 MobiDBLite consensus disorder prediction 62 83 - -
Spst3g04032 1107 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1018 1101 IPR013083 -
Spst3g04032 1107 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 408 495 IPR013083 -
Spst3g04032 1107 ProSiteProfiles Zinc finger RING-type profile. 449 491 IPR001841 -
Spst3g04032 1107 SUPERFAMILY RING/U-box 1042 1100 - -
Spst3g04032 1107 MobiDBLite consensus disorder prediction 112 136 - -
Spst3g04032 1107 MobiDBLite consensus disorder prediction 62 80 - -
Spst3g04032 1107 MobiDBLite consensus disorder prediction 148 162 - -
Spst3g04032 1107 MobiDBLite consensus disorder prediction 1 38 - -
Spst3g04032 1107 SMART ring_2 1055 1096 IPR001841 -
Spst3g04032 1107 SMART ring_2 449 490 IPR001841 -
Spst3g04032 1107 MobiDBLite consensus disorder prediction 1 16 - -
Spst3g04032 1107 MobiDBLite consensus disorder prediction 330 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04032 Spst-Chr3 91052513 91068218 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04032 393 497 C3H Transcription Factor Family AT2G15530 33.036 6.07e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04032 - K10635 vra:111241966 527.324