Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04031 ATGTCTTCTTCGTCCTATTCCACAAAGGACCAAATCTCCCTTGCCCTTCGTCACATTCTTCTTCGTTCCTCCCTCACAGCCCACGAGGGTAACCACGCACGCAATCCCATGTCCATGTCCACGCCCATGCTGGGGTTCTGCACCTCCAAAACTGCACAACAAAAGGCACTACGAGATGGGATCTCGGACTACAAGGGTTCTTCTGCTGCCAACGTGTCTTCTTCGTCGGTGGCAGTCAATACTGAGAATGGAACCGATGACTGCCACTGCGAGAGTGAGGTGCTGCTTCGAGAGGGTGAAACGTTGGTAGAAGAGGTTCGAGTTACGCCGAAGTGCTTTCGTTCTGGGAGTTCCTCCAAAAGAAGCAGAGCCGCGGAAGTTCATAACTTGTCTGAAAAGAGGAGGAGGAGTAGGATCAATGAGAAATTGAAGGCTTTGCAAAATCTAATTCCTAATTCTAACAAGACCGATAAGGCTTCAATGCTTGATGAAGCTATTGAATACCTTAAACAGCTTCAGCTCCAAGTACAGCCCCCCCCCCACCACCCCAAACCTACAAGACCAACCCCCCTACCCTCCCCACTGCCACACCCCAATCTGCAAGACCCAGCCCCCCACCCTAACCCGCCAGACGACCTAAGAGTTGGACCGCTCGCCGTCACAGAAGCTGGGGCGAGTTGCGCCACCTGGCCAGATTGCTGGATGAGGTTCATTTTTGGCTTTCTGCTTCCGTGGAAGCTCAGATGGAGGGAGCGGAGCTCCGAATTTAAGATGCTGTCAATGAGAAATGGGTTGAGTTGGCATCCTATGTTCCTTCCAGAAGGTTTGCAACCTCCGCAATTGTCTCAGATGAGAATGGATTCAAGTGAAGAAAACAGGTCTATCCCTTCAAACACTACAGCAACTCTGCCTATGCACCAAGAAAACCCCATGCACTATTCATCCAATCTTCCTAACAAACACACAGTAGCAGATCAGCCATCCATGTCCACCCCAGCATATGTATTCAACTCAGAAACTTCTTTCAGGCTGGAATCTCCCATCCCTGAAAATATAAGATCATTTCAACTCAGAAGCTTTTCTGAGCAGATATGCAGAGAAGACATATTGCGGCACCAACATTTGAGTGCAAACCATTCAGATACCAATCCATTAGGTTGCTCTCAAGTTAAAGACAACATCATTTTGGAAAACTGCATCCCTGGAAGTGATCGATCTGGAGTGGTGTTGAGAAATAGTGAGCCCAACACTATTCTGACCCAGCGGTTAAGTGGATGGGAGACAATGTTAGAGTCTAATACACCTCAAGTAAGTGGTTCATCTTCTACCGCACCATCCTCTAAAGCCAAAGCAAAGGTTATAGGATCTGCATTTGACAAGTCAAGTACACAGGCAACAGAGTTTCGATATCTTATAGGTTTTTGA 1425 0.4793 MSSSSYSTKDQISLALRHILLRSSLTAHEGNHARNPMSMSTPMLGFCTSKTAQQKALRDGISDYKGSSAANVSSSSVAVNTENGTDDCHCESEVLLREGETLVEEVRVTPKCFRSGSSSKRSRAAEVHNLSEKRRRSRINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQPPPHHPKPTRPTPLPSPLPHPNLQDPAPHPNPPDDLRVGPLAVTEAGASCATWPDCWMRFIFGFLLPWKLRWRERSSEFKMLSMRNGLSWHPMFLPEGLQPPQLSQMRMDSSEENRSIPSNTTATLPMHQENPMHYSSNLPNKHTVADQPSMSTPAYVFNSETSFRLESPIPENIRSFQLRSFSEQICREDILRHQHLSANHSDTNPLGCSQVKDNIILENCIPGSDRSGVVLRNSEPNTILTQRLSGWETMLESNTPQVSGSSSTAPSSKAKAKVIGSAFDKSSTQATEFRYLIGF 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04031 474 SMART finulus 129 178 IPR011598 GO:0046983
Spst3g04031 474 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 120 178 IPR036638 GO:0046983
Spst3g04031 474 MobiDBLite consensus disorder prediction 113 136 - -
Spst3g04031 474 Pfam Helix-loop-helix DNA-binding domain 127 173 IPR011598 GO:0046983
Spst3g04031 474 FunFam Basic helix-loop-helix transcription factor 118 179 - -
Spst3g04031 474 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 8 362 IPR031066 -
Spst3g04031 474 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 123 172 IPR011598 GO:0046983
Spst3g04031 474 Gene3D - 118 181 IPR036638 GO:0046983
Spst3g04031 474 CDD bHLH_AtPIF_like 124 177 IPR047265 -
Spst3g04031 474 MobiDBLite consensus disorder prediction 176 215 - -
Spst3g04031 474 MobiDBLite consensus disorder prediction 178 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04031 Spst-Chr3 91016948 91027535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04031 83 177 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 73.684 2.78e-30 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst3g04031 HLH 3.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04031 - - vun:114177198 256.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04031 3 91016948 91027535 Spst3g04031 3 91016948 91027535 ECH