Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04023 ATGGCAAGACAACCTGAAAGCCAAAAAGCACAGAAAAATGCTAAAGCTGGTTTCCATTATTTAGAAATTCTGAAAAGGTCTGCCAAAACAGTTAGCACGGAGAGAGGGCCAGTGTACTGTTATCTTCATGTATGCGTGCCTTTGCGGCCCTTTCCGACGGTGACGGAGGTGAGGTTGAAGGTTGCAGTGAATTTACTTATCTCCCAGTCTTCTTCTGACATATGTCATGTGACTGTGGGGGCTACTGGGAGCCTTTATCAAACCAAACTGGTAAAACTTCAACCCAACTTACCAAAGCAAACACCTTTCAGTCAAAAACAATCCTGCTTGATTCATGCACCAACATTGCAACCAATCCTTCTGCCCCACTTCCACCGCTACCTGAACCCGTTTCCTGAGCCTCCCATACTCTGCAACTCTCTTTTTTCACCTTCCCCATTCTCATCTTTCATGGATGTGGACATACTGAAGGCTTCCGCGTGTGATACCACCAACATGGACGTGATGGCAATGATGATGCAAATGGAAAAGTTCCCCGAATTCTCCGACGCTTTTTATACCACCACCCCCCCTTACACAGAAACCGACTTGTTGTCAACTGGAAGCTCCTCAACCAGCGTTTCCACCATTTTCAACAACCCAACTCCACCGACTCTCGTTGATCCGCCACCGCCAAATGTTCTCAATTTTTCCAATAACGACAACAATCTTATCCAACAACCTATGACACCCTCCGTCCACGCCCCACAACCCAACACCACTTCCTTCCCCTACCCCTCGGAGAAAAAAAACTCTATGGCAGCGATGAGGGAAATGATATTCCGAATAGCGGTGATGCAACCGATTCACATAGACCCCGAATCCATAAAACCACCGAAGCGAAGGAACGTGAAGATTTCGAAGGATCCGCAGAGCGTGGCGGCGAGGCACAGACGGGAAAGGATAAGCGAGAAGATAAGGATTCTGCAGAGATTAGTCCCTGGTGGCACCAAGATGGACACGGCTTCTATGCTGGATGAGGCCATTCACTATGTCAAGTTCTTGAAGAAACAGGTGCAGACGCTGGAACAAGCAGGGGCAAATAGACAACACAGTCACAATACCGTTGGCGCTGTCGGTTTCCCAATAGGGATGTCTAACACCAACAACGTTAACTATTCTTCTTTGTTGATGAAGGGTTGCCAACCTTGTCAAGTGTTCGGTTCTACTTCTAAACAATTGCTCAGCTAA 1230 0.474 MARQPESQKAQKNAKAGFHYLEILKRSAKTVSTERGPVYCYLHVCVPLRPFPTVTEVRLKVAVNLLISQSSSDICHVTVGATGSLYQTKLVKLQPNLPKQTPFSQKQSCLIHAPTLQPILLPHFHRYLNPFPEPPILCNSLFSPSPFSSFMDVDILKASACDTTNMDVMAMMMQMEKFPEFSDAFYTTTPPYTETDLLSTGSSSTSVSTIFNNPTPPTLVDPPPPNVLNFSNNDNNLIQQPMTPSVHAPQPNTTSFPYPSEKKNSMAAMREMIFRIAVMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGANRQHSHNTVGAVGFPIGMSNTNNVNYSSLLMKGCQPCQVFGSTSKQLLS 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04023 409 Coils Coil 338 358 - -
Spst3g04023 409 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 299 348 IPR011598 GO:0046983
Spst3g04023 409 SMART finulus 305 354 IPR011598 GO:0046983
Spst3g04023 409 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 206 397 IPR045843 GO:0003700|GO:0006355
Spst3g04023 409 CDD bHLH_AtIND_like 300 356 - -
Spst3g04023 409 Pfam Helix-loop-helix DNA-binding domain 309 348 IPR011598 GO:0046983
Spst3g04023 409 Gene3D - 298 369 IPR036638 GO:0046983
Spst3g04023 409 FunFam BHLH transcription factor 302 366 - -
Spst3g04023 409 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 303 358 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04023 Spst-Chr3 90941234 90945550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04023 162 357 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 56.650 9.85e-49 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst3g04023 HLH 3.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04023 - - gmx:100800816 320.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04023 3 90941234 90945550 Spst3g04023 3 90941234 90945550 ECH