Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04014 ATGTCGCAACGTTCGACACCAGCGCCGTTTTTGACGAAGACGTATCTGTTGGTGGATGACCCTGCCACCGATGACGTTATTTCGTGGAGCGAAACGGGTAACACTTTTGTCGTTTGGAAACACGCCGATTTCGCTAAGGATTTGCTTCCCAAATACTTCAAACACAACAATTTCTCCAGCTTCGTCCGCCAACTCAACACCTATGGGTTCCGAAAGATCGTCCCCGACAAATGGGAATTCGCCAACGAGTGTTTCAAGCGAGGACAAAAGGAGCTCCTCGCCGAGATCAAGCGTCGGAAGACGGTGCTGCAATCGCCGGCGGCCGGAAAATGTGGAGGCGGCCGAGGGAATATCTCGGCGTCTCACTCCGGTGGTGATGACATGGGGTCAACGTCGACAGGGTCAGTGGAGGGTGCAACGACGACGACCCACTGTGCGGATTTATCGGGCGAGAACGAGAAATTGAAGAAGGACAACGAGAAATTGAAGAAGGACAACGAGAAATTGAGCGGCGAGCTGGCGCGTGCGAGAAAGCAGTGCGACGAACTGGTGTCGTTTCTGAGGGAGTCGTTGAACGTGTGCCCCGATGTGATCAACCGTATCATTCGGCAAGGAACGTGTGGGTCCAGCGATGATGCGGTGCGTTTTGAGTCTATTCCTGATGATGACGATGAAAATGCGGTAGGTGAGTGTGAACCCAAAGTTGATGATGAGAGCGGTGGAGATACTTTGAAACTGTTTGGTGTTTGGTTGAAGGGTCAAAATGGGAATGAAAAAGACAAATTGAAGATTGGTAACTGCCGCAAGAGAGGGCGTGATGACCCTATCGCTGGTTCTGCCAAGGAACTGAAAACCCTTGTGTAG 864 0.5162 MSQRSTPAPFLTKTYLLVDDPATDDVISWSETGNTFVVWKHADFAKDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANECFKRGQKELLAEIKRRKTVLQSPAAGKCGGGRGNISASHSGGDDMGSTSTGSVEGATTTTHCADLSGENEKLKKDNEKLKKDNEKLSGELARARKQCDELVSFLRESLNVCPDVINRIIRQGTCGSSDDAVRFESIPDDDDENAVGECEPKVDDESGGDTLKLFGVWLKGQNGNEKDKLKIGNCRKRGRDDPIAGSAKELKTLV 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04014 287 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst3g04014 287 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst3g04014 287 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst3g04014 287 MobiDBLite consensus disorder prediction 220 239 - -
Spst3g04014 287 FunFam Heat stress transcription factor B-4 2 100 - -
Spst3g04014 287 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst3g04014 287 SUPERFAMILY "Winged helix" DNA-binding domain 6 99 IPR036390 -
Spst3g04014 287 Coils Coil 145 179 - -
Spst3g04014 287 Gene3D - 2 101 IPR036388 -
Spst3g04014 287 MobiDBLite consensus disorder prediction 123 148 - -
Spst3g04014 287 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 204 IPR027725 -
Spst3g04014 287 MobiDBLite consensus disorder prediction 107 151 - -
Spst3g04014 287 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst3g04014 287 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04014 Spst-Chr3 90838832 90841465 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04014 2 254 HSF AT4G36990 52.852 3.36e-79 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Spst3g04014 HSF_DNA-bind 9.4e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04014 K09419 - gmx:100801897 414.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04014 3 90838832 90841465 Spst3g04014 3 90838832 90841465 ECH
Spst3g04014 3 90838832 90841465 Spst3g04014 3 90838832 90841465 PCT