Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04008 ATGGTGGTGATTGATGAAAGGAACCGGGATCGTGCGAACAGGAGGGACGTGGTGGAGCTTCCACAATATGATCAAGCTGTGACTGTGGCATATTATGGGGAGGAGTTACATGGGGGCATACCTCTACCCCACTTCTCTAGAATCTCTCCTTTAAACATGCATAAACAAAACAAGGTGGTGGAGCATAAATACAAGCTAATGAATAATAGTCAGACCAAGCAAGCAACTCCTGCTGAATCTCAGAAGTTTGCAAGTTCCATGAAGGTTGCAATAGAAGGAACATCTTCTCGTGGTGAGGTCATGTCATCTGCAGTTCTTAAAGCAGAGGAGGTCCAATCAAATTTGAGACCAGAATTTCCTAGTTTTGTGAAGTCTTTAGTTAGATCACATGTTGCTAGTTGTTTTTGGATGGGGCTTCCTGTGTCATTCTGTAAAAGACACTTACCGGGTAAGGATACAACAATCATTTTGGAAGATGAATCTGGTAAAGAATACAATACAAAATTCATTGCCTGCAAGACGGGATTGAGTGCTGGATGGAGACAGTTTTCTGCTGTGCACAAATTGCAGGAGGGTGATGCGGTGGTCTTTCAATTAGTTGAACCAACCAAATTTAAGGTTTATATAATAAGAGCTAATAATACGAGGGAACTGGATGGGGCCTTTCTGAATCTTGATAGTTGCACAAAACAAAAAATGGGAGGCAAGACTTGTTTCTCTATGCTTTTAGTTTCTTGTATAATATCAATCACAAATCATCATGGATTTATGCATTCTTTGATTTGCTCCTTGTTCTCAGGCAAAGATAATGCAGATACTGATGTTGTGGTATGCAATAGCTCAAAGAGAAAACATGGCAAATCTGTCCCACTAGATGTCCAAAAGATAAAGAGGGCAAACTTGTCCAGTCTGAGACCTAAGGTGAGGCCATCAGTAGAACAATCCGAAAATGATAGTGAGGAAGCTCTCTCAGAAATTATGGAGGAGTATAAAATGCTTGAGTTGGAAGATGTGAGAGGCTTTGAAAATTTTAGCATCATAGTTGATGGAGTGTCAATAGATGCTGAATTCCCTACTGAGGTTAGAAACAAGTACTACAGGCTATGTTGCAGTCAGCATGCATTTCTTCATGAGAATCTCATCAAGGGCATGAACTATAAGCTGATTACTGGAATTATATCCGAAACTGTCAACATTGCTGATGCCATAAAGGTTAGTGTGATATGCACCCCACGTGTTGAATTTGCTAACTGGGACAAAACGTTGCTTGCCTTTGAGCATCTGGGCATGAATGTTGAGTTTCTAAGGGTCCGATTACGCCGGCTTGTAAGCATTGCTTATGAGAAAAGTAATGCCTCAGAGGCCAAAAAATACTTGGCATATAGAAATGAATACAGTCGCGCAGATGCTGAAATAAGAAACATGGAAGCCAAGCTCGAAGAATTGAAAGGAGCATGTAATGGTTTTGGTGCTTATCTTGGGAGTTTGAAGGGCAAAGCTGAAAACTATCAGATCCAGTTTCAAAGAGAGGTCGATGCTCCTTGGTGA 1548 0.4096 MVVIDERNRDRANRRDVVELPQYDQAVTVAYYGEELHGGIPLPHFSRISPLNMHKQNKVVEHKYKLMNNSQTKQATPAESQKFASSMKVAIEGTSSRGEVMSSAVLKAEEVQSNLRPEFPSFVKSLVRSHVASCFWMGLPVSFCKRHLPGKDTTIILEDESGKEYNTKFIACKTGLSAGWRQFSAVHKLQEGDAVVFQLVEPTKFKVYIIRANNTRELDGAFLNLDSCTKQKMGGKTCFSMLLVSCIISITNHHGFMHSLICSLFSGKDNADTDVVVCNSSKRKHGKSVPLDVQKIKRANLSSLRPKVRPSVEQSENDSEEALSEIMEEYKMLELEDVRGFENFSIIVDGVSIDAEFPTEVRNKYYRLCCSQHAFLHENLIKGMNYKLITGIISETVNIADAIKVSVICTPRVEFANWDKTLLAFEHLGMNVEFLRVRLRRLVSIAYEKSNASEAKKYLAYRNEYSRADAEIRNMEAKLEELKGACNGFGAYLGSLKGKAENYQIQFQREVDAPW 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04008 515 ProSiteProfiles B3 DNA-binding domain profile. 122 213 IPR003340 GO:0003677
Spst3g04008 515 Coils Coil 316 336 - -
Spst3g04008 515 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 67 215 IPR044837 -
Spst3g04008 515 Coils Coil 458 485 - -
Spst3g04008 515 Pfam B3 DNA binding domain 122 212 IPR003340 GO:0003677
Spst3g04008 515 Gene3D - 101 215 IPR015300 -
Spst3g04008 515 CDD B3_DNA 120 211 IPR003340 GO:0003677
Spst3g04008 515 SMART B3_2 122 213 IPR003340 GO:0003677
Spst3g04008 515 SUPERFAMILY DNA-binding pseudobarrel domain 116 213 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04008 Spst-Chr3 90762653 90766608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04008 104 228 B3 DNA Binding Superfamily AT3G19184 47.244 2.64e-34 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Spst3g04008 B3 1.1e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04008 - - vra:106768002 818.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04008 3 90762653 90766608 Spst3g04008 3 90762653 90766608 ECH