Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03987 ATGAGGAGGGAATTTACAACTTATGAAGGAACACTCAGTAGTGAAACTCTCACCCCTCTTCTTCCCCTCACCTTTCATTCTCCAAATCTCCTCTCTGATATCTGCCTCTGCGTTCGCAGATATCGGTCTCACCCCTCTTCCTCCCCTCACCTCTCATTCTCCATATCTTCTCTCAGATTTGTCTTCGCGTTCGCTGCTTCTATGACTGCTGCCTTCGTGTTCGCTGCCTTCACGTTTGCTGTAACTGGATTCAAGACGATGACAATTTCATTTGTAGGCTTGTTGTCAATAGATGTTAAGTTATCTTCGAAGCAACGCTTGATGGTGAACCCTAAATGCTTCTTGGACATTAGCATCGCCGGAGAGTTAGAGGGAAGAATTGTCATTGAACTATTCCATGACATCGTTCCCAAAACTGCAGAAAATTTCAGAGCTCTCTGCACCGGTGAAAAGGGCATTGCTCCCAACACTAATGTCCCCCTTCATTATAAGGGCGTGTGTTTCCACCGTGTGATCAAAGGGTTCATGATCCAAGGAGGCGACATCTCCGCTGGCGATGGTACCGGAGGGGAGTCCATCTACGGCCTGAAGTTCGAGGACGAGAACTTGGAGCTGAAGCACGAGAGGAAGGGTATGCTTTCCATGTTCAATGCGAGACCCAACACCAATAGCTCTCAGTTCTTCATCACCACCACGCGCACCCCTAACTTGGATGGTAAACACGTCGTTTTCGGAAGAGTTGTTAAAGGAATGGGCGTCGTTCGCTCCGTCGAACACGTTGTTACTGACGAAAACAACCGTCCCACTCAGGACGTCGTAATCGTCGATTGTGGTGAAATTTCTGAAGGGCAAGATGATGGAGTCGTTAACTTCTTTAAGGATGGTGACACTTATCCCGATTGGCCTGCTGATCTTGATGTCAAACCTGATGAACTTTCTTGGTGGATGAGTTCTGTGGATTCAATCAAGGCTCTGGGGAATGAGCAGTACAAGAAGCAAGATTATAAGATGGCTCTGAGAAAGTATCGCAAAGCGTTGCGCTATTTGGATGTGTGTTGGGAGAAGGACGACATTGACCAAGAGAACAGTGCCGCCTTAAGGAAGACAAAATCTCAAATCTTTACCAATAGCTCTGCTTGTAAATTGAAATTAGGTGATCTACGAGGAGCGTTACTGGATTCAGACTTTGCAATGCACGACGGAGATAATGCTAAAGCTCTGTTTCGCAAAGGCCAGGCATATATGTTACTCAATGACCTGGATGCTGCTGTTGAAAGCTTCAAGAAAGCATTAGAGTTAGAGCCTAATGATGGAGGGATTAAAAAGGAGTATGCCACTGCCCGGAAGAAGGTTGCCGATAGACGTGATAGAGAGAAAAAAGCTTATTCTAGAATGTTCAAATAG 1404 0.4608 MRREFTTYEGTLSSETLTPLLPLTFHSPNLLSDICLCVRRYRSHPSSSPHLSFSISSLRFVFAFAASMTAAFVFAAFTFAVTGFKTMTISFVGLLSIDVKLSSKQRLMVNPKCFLDISIAGELEGRIVIELFHDIVPKTAENFRALCTGEKGIAPNTNVPLHYKGVCFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENLELKHERKGMLSMFNARPNTNSSQFFITTTRTPNLDGKHVVFGRVVKGMGVVRSVEHVVTDENNRPTQDVVIVDCGEISEGQDDGVVNFFKDGDTYPDWPADLDVKPDELSWWMSSVDSIKALGNEQYKKQDYKMALRKYRKALRYLDVCWEKDDIDQENSAALRKTKSQIFTNSSACKLKLGDLRGALLDSDFAMHDGDNAKALFRKGQAYMLLNDLDAAVESFKKALELEPNDGGIKKEYATARKKVADRRDREKKAYSRMFK 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03987 467 FunFam Peptidyl-prolyl cis-trans isomerase D 101 285 - -
Spst3g03987 467 FunFam peptidyl-prolyl cis-trans isomerase D 317 467 - -
Spst3g03987 467 Gene3D - 98 286 IPR029000 -
Spst3g03987 467 Pfam Tetratricopeptide repeat 404 437 IPR001440 GO:0005515
Spst3g03987 467 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 112 280 - -
Spst3g03987 467 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 163 180 IPR020892 GO:0003755|GO:0006457
Spst3g03987 467 ProSiteProfiles TPR repeat region circular profile. 404 437 - -
Spst3g03987 467 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 211 226 IPR002130 GO:0000413|GO:0003755
Spst3g03987 467 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 168 180 IPR002130 GO:0000413|GO:0003755
Spst3g03987 467 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 226 238 IPR002130 GO:0000413|GO:0003755
Spst3g03987 467 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 239 254 IPR002130 GO:0000413|GO:0003755
Spst3g03987 467 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 131 146 IPR002130 GO:0000413|GO:0003755
Spst3g03987 467 SUPERFAMILY Cyclophilin-like 105 283 IPR029000 -
Spst3g03987 467 SMART tpr_5 404 437 IPR019734 GO:0005515
Spst3g03987 467 SMART tpr_5 319 352 IPR019734 GO:0005515
Spst3g03987 467 CDD cyclophilin_ABH_like 111 278 - -
Spst3g03987 467 Gene3D Tetratricopeptide repeat domain 319 467 IPR011990 GO:0005515
Spst3g03987 467 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 116 278 IPR002130 GO:0000413|GO:0003755
Spst3g03987 467 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 114 279 IPR002130 GO:0000413|GO:0003755
Spst3g03987 467 ProSiteProfiles TPR repeat profile. 404 437 IPR019734 GO:0005515
Spst3g03987 467 SUPERFAMILY TPR-like 317 463 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03987 Spst-Chr3 90407129 90416570 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03987 125 277 U-box Gene Family AT5G67530 44.805 5.65e-33 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03987 K05864 - gmx:100803839 684.871