LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst3g03987	ATGAGGAGGGAATTTACAACTTATGAAGGAACACTCAGTAGTGAAACTCTCACCCCTCTTCTTCCCCTCACCTTTCATTCTCCAAATCTCCTCTCTGATATCTGCCTCTGCGTTCGCAGATATCGGTCTCACCCCTCTTCCTCCCCTCACCTCTCATTCTCCATATCTTCTCTCAGATTTGTCTTCGCGTTCGCTGCTTCTATGACTGCTGCCTTCGTGTTCGCTGCCTTCACGTTTGCTGTAACTGGATTCAAGACGATGACAATTTCATTTGTAGGCTTGTTGTCAATAGATGTTAAGTTATCTTCGAAGCAACGCTTGATGGTGAACCCTAAATGCTTCTTGGACATTAGCATCGCCGGAGAGTTAGAGGGAAGAATTGTCATTGAACTATTCCATGACATCGTTCCCAAAACTGCAGAAAATTTCAGAGCTCTCTGCACCGGTGAAAAGGGCATTGCTCCCAACACTAATGTCCCCCTTCATTATAAGGGCGTGTGTTTCCACCGTGTGATCAAAGGGTTCATGATCCAAGGAGGCGACATCTCCGCTGGCGATGGTACCGGAGGGGAGTCCATCTACGGCCTGAAGTTCGAGGACGAGAACTTGGAGCTGAAGCACGAGAGGAAGGGTATGCTTTCCATGTTCAATGCGAGACCCAACACCAATAGCTCTCAGTTCTTCATCACCACCACGCGCACCCCTAACTTGGATGGTAAACACGTCGTTTTCGGAAGAGTTGTTAAAGGAATGGGCGTCGTTCGCTCCGTCGAACACGTTGTTACTGACGAAAACAACCGTCCCACTCAGGACGTCGTAATCGTCGATTGTGGTGAAATTTCTGAAGGGCAAGATGATGGAGTCGTTAACTTCTTTAAGGATGGTGACACTTATCCCGATTGGCCTGCTGATCTTGATGTCAAACCTGATGAACTTTCTTGGTGGATGAGTTCTGTGGATTCAATCAAGGCTCTGGGGAATGAGCAGTACAAGAAGCAAGATTATAAGATGGCTCTGAGAAAGTATCGCAAAGCGTTGCGCTATTTGGATGTGTGTTGGGAGAAGGACGACATTGACCAAGAGAACAGTGCCGCCTTAAGGAAGACAAAATCTCAAATCTTTACCAATAGCTCTGCTTGTAAATTGAAATTAGGTGATCTACGAGGAGCGTTACTGGATTCAGACTTTGCAATGCACGACGGAGATAATGCTAAAGCTCTGTTTCGCAAAGGCCAGGCATATATGTTACTCAATGACCTGGATGCTGCTGTTGAAAGCTTCAAGAAAGCATTAGAGTTAGAGCCTAATGATGGAGGGATTAAAAAGGAGTATGCCACTGCCCGGAAGAAGGTTGCCGATAGACGTGATAGAGAGAAAAAAGCTTATTCTAGAATGTTCAAATAG	1404	0.4608	MRREFTTYEGTLSSETLTPLLPLTFHSPNLLSDICLCVRRYRSHPSSSPHLSFSISSLRFVFAFAASMTAAFVFAAFTFAVTGFKTMTISFVGLLSIDVKLSSKQRLMVNPKCFLDISIAGELEGRIVIELFHDIVPKTAENFRALCTGEKGIAPNTNVPLHYKGVCFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENLELKHERKGMLSMFNARPNTNSSQFFITTTRTPNLDGKHVVFGRVVKGMGVVRSVEHVVTDENNRPTQDVVIVDCGEISEGQDDGVVNFFKDGDTYPDWPADLDVKPDELSWWMSSVDSIKALGNEQYKKQDYKMALRKYRKALRYLDVCWEKDDIDQENSAALRKTKSQIFTNSSACKLKLGDLRGALLDSDFAMHDGDNAKALFRKGQAYMLLNDLDAAVESFKKALELEPNDGGIKKEYATARKKVADRRDREKKAYSRMFK	467

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst3g03987	467	FunFam	Peptidyl-prolyl cis-trans isomerase D	101	285	-	-
	Spst3g03987	467	FunFam	peptidyl-prolyl cis-trans isomerase D	317	467	-	-
	Spst3g03987	467	Gene3D	-	98	286	IPR029000	-
	Spst3g03987	467	Pfam	Tetratricopeptide repeat	404	437	IPR001440	GO:0005515
	Spst3g03987	467	PANTHER	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	112	280	-	-
	Spst3g03987	467	ProSitePatterns	Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.	163	180	IPR020892	GO:0003755\|GO:0006457
	Spst3g03987	467	ProSiteProfiles	TPR repeat region circular profile.	404	437	-	-
	Spst3g03987	467	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	211	226	IPR002130	GO:0000413\|GO:0003755
	Spst3g03987	467	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	168	180	IPR002130	GO:0000413\|GO:0003755
	Spst3g03987	467	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	226	238	IPR002130	GO:0000413\|GO:0003755

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst3g03987	Spst-Chr3	90407129	90416570	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst3g03987	125	277	U-box Gene Family	AT5G67530	44.805	5.65e-33	130

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst3g03987	K05864		-	gmx:100803839	684.871

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