Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03984 ATGTCGTCGTTGAATTCACCGTGCGCCGCGTGCAAGCTTCTGCGGCGGAAGTGCACGCAGGAGTGCGTGTTCGCGCCGTACTTTCCGCCAGACAATCCGCAACGGTTCGAGTGCGTGCACCGCGTGTTCGGCGCGAGCAACGTGTCGAAGCTGCTGAACGAGCTCAGCGTGGCGCAGCGCGACGATGCCGTTAAGTCACTGGTGTATGAGGCGGAGGCGCGATTGCGTGACCCCGTGTATGGCTGCGTGGGATTAATTTCTTTGCTACAGCAACGGCTCCGTCAAATCCAAATGGAGCTTCAAAGCGCGAAGAAGGAATTCTCCACTTATGTTAGTCCTCAGACTATGCAGATTCTATTGGCCAATCCAGGGATGTTACCTCCTGCCGAGGTTGTCGTGCCTCATCTGCATCAATCTATGTTCAATCATGGTGGCAACAACATGGCGCCGCCGCAGATTTTGGTTGGCCATGGCGGTGGCCAGACGGTGGTTCGCGACCCTCAGCAGCAGGATTTTCAAGAAGCTCAGCAGATGGTTCTTGCAACTAGGGAGCAGCAACAGATGTTTAGAAACTATGAGCAACAAGAGTTTGGTGGTTTTGAACCTAGTAATGGTGGATTTGGGAACCAAGCAGAATTGTTGTCTCCTTCTTTGGCACTTGGAAATTTTGGTAATGTTGGAGCTTACCAGATGCAGCAGCAAGGAGATCCACATCCCATTGAGGCACAGTTGCTCCTCTCGCCACAGCAGGTGCAGCCCCATCAGCAACAACAGTGTGAAAGTGAGGATAAGGAATGTGCTTGA 804 0.5299 MSSLNSPCAACKLLRRKCTQECVFAPYFPPDNPQRFECVHRVFGASNVSKLLNELSVAQRDDAVKSLVYEAEARLRDPVYGCVGLISLLQQRLRQIQMELQSAKKEFSTYVSPQTMQILLANPGMLPPAEVVVPHLHQSMFNHGGNNMAPPQILVGHGGGQTVVRDPQQQDFQEAQQMVLATREQQQMFRNYEQQEFGGFEPSNGGFGNQAELLSPSLALGNFGNVGAYQMQQQGDPHPIEAQLLLSPQQVQPHQQQQCESEDKECA 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03984 267 Coils Coil 86 106 - -
Spst3g03984 267 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 188 - -
Spst3g03984 267 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Spst3g03984 267 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Spst3g03984 267 MobiDBLite consensus disorder prediction 247 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03984 Spst-Chr3 90363416 90364219 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03984 1 128 AS2 family AT5G66870 71.318 1.17e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Spst3g03984 LOB 3.3e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03984 - - vum:124826574 371.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03984 3 90363416 90364219 Spst3g03984 3 90363416 90364219 ECH
Spst3g03984 3 90363416 90364219 Spst3g03984 3 90363416 90364219 PCT
Spst3g03982 3 90355941 90356459 Spst3g03984 3 90363416 90364219 PCT