Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03982 ATGACTCCGTGCGGCGCGTGCAAGTACCAAAGACGGAGGTGTGGGCAGTACTGCCTGCTGGCGCCATATTTCCCGGCGGAGAATATTCAGCAGTTCGCGTACGTGCACCACGTGTTCGGCGGGGGCAACGTAAGCAACATTCTGAAGTCAACGAAGCTGGAGATGCGAATGTGGGTGGTAAGGGCGCTGGCGTACCAGGCGGAGGCGCGTGTGAGGGACCCGGTGCACGGGTGCGTGGGGGTGATACGGGAGCAGGAGGAGAATCTCCGAATCCTGAAAGAGAAGCTGGAGAAGGCCCAAAGGGAACTGGCCCAATACTTGGGCCCTGAGGTTGTGCGAAAGCTGAGTCCCAGATATGACGGTCCCTCTGTCACCGTTGATGATGTTGATCTTAGCTCTCCGGATCCTTTTCCGTCTTGGGAACCTACTTCCCCCCATGCTGCTTCTTCTTCGCGGATGCACCCACCACATTCTGACGCTGGCAATGTCAAGGGTAAGAGTGTTGCTCCTCCTTCTTGA 519 0.5742 MTPCGACKYQRRRCGQYCLLAPYFPAENIQQFAYVHHVFGGGNVSNILKSTKLEMRMWVVRALAYQAEARVRDPVHGCVGVIREQEENLRILKEKLEKAQRELAQYLGPEVVRKLSPRYDGPSVTVDDVDLSSPDPFPSWEPTSPHAASSSRMHPPHSDAGNVKGKSVAPPS 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03982 172 Coils Coil 82 102 - -
Spst3g03982 172 ProSiteProfiles LOB domain profile. 2 103 IPR004883 -
Spst3g03982 172 MobiDBLite consensus disorder prediction 118 172 - -
Spst3g03982 172 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 141 - -
Spst3g03982 172 Pfam Lateral organ boundaries (LOB) domain 3 100 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03982 Spst-Chr3 90355941 90356459 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03982 2 112 AS2 family AT5G66870 47.748 8.23e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Spst3g03982 LOB 1.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03982 - - gmx:102663028 209.534
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03982 3 90355941 90356459 Spst3g03982 3 90355941 90356459 ECH
Spst3g03982 3 90355941 90356459 Spst3g03984 3 90363416 90364219 PCT