Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03981 ATGGAACTGAGCTTGGATTTGAGTTTGGCTTTTGTCCCCAGAAGAACCGTTGGTGAGATTCTTGGCGAGGTTGCTCCGAGCGGAGATGGGTCTCAGAGAATGGCCACGCTTGAGGACTTTCTCCTAAGGTTGGAAGACGAGAAGAGGAAGATCGAGGCCTTCAAACGTGAACTTCCTCTTTGCATGGTCCTTGTGAACGATGCTATAACTAAATTGAAAGAGGAGATAAACGGAGGTGTGAGAATCCAAGATGAACCCGTGGTTGAAGAATTTATGCCACTTATGAAAACCAATTCTGGCGGAAGTGAGTCTTTGAACATGGGTAAGGAACGCAGTGACATGAAGAATTGGATGAACTCTGTTCAGCTATGGAACGTTGAATCCAAACCGAGGAATGAAGAGGACGATCGATGCGTCCCCAACAATCCAATCCAATCACAGAATGAGACCCACAGGAGTGGCGGAGCATCACTAGCATTCAATGGAAACAAGGGTGTCTCAAAGACAGTGGTGAGTGAAGACAAGGGGGTGTCACAGGTTCCTATTCTTGGTTTGATGAGACCAGTGTTTGAATTGAATCATATAAAAACAGAAAGTGGCTATGAACATGGGTCGTCCATGATTGCAAGCTCAGCTGAGATAAAGGGTCAAGCACAACCGCAGCAGAATCCGAGGAAACAAAGGAGATGCTGGTCACCAGAGCTTCATAGGCGATTTGTTGATGCCCTTCAACAATTAGGGGGACCACAAGTGGCCACTCCAAAGCAGATTAGAGAACTGATGCAGGTGGTAGGCCTGACAAATGATGAAGTGAAAAGCCATTTGCAAAAGTACAGACTTCATTTTAGAAGACCTCAAGTTTCTTCAGTAGGCCAGGCTAATAGTGACTTATGCCTGATGGTACAAGATAAATGTGGAGATAATGAAAAATTAAAAGGGAACTTGTCACAATCTGCCTCTCCACAAGGTCCTCTTTTCCTAGGAGGGTCTGGACGCAACAGCATAGAAACAGAAGAAGATGAGCAATCAGATTGCCACAATTGGAAAGGTGGCCTTCACCACCAACCAGAAGCTGAACTTCTCTGA 1086 0.4558 MELSLDLSLAFVPRRTVGEILGEVAPSGDGSQRMATLEDFLLRLEDEKRKIEAFKRELPLCMVLVNDAITKLKEEINGGVRIQDEPVVEEFMPLMKTNSGGSESLNMGKERSDMKNWMNSVQLWNVESKPRNEEDDRCVPNNPIQSQNETHRSGGASLAFNGNKGVSKTVVSEDKGVSQVPILGLMRPVFELNHIKTESGYEHGSSMIASSAEIKGQAQPQQNPRKQRRCWSPELHRRFVDALQQLGGPQVATPKQIRELMQVVGLTNDEVKSHLQKYRLHFRRPQVSSVGQANSDLCLMVQDKCGDNEKLKGNLSQSASPQGPLFLGGSGRNSIETEEDEQSDCHNWKGGLHHQPEAELL 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03981 361 Pfam Myb-like DNA-binding domain 228 279 IPR001005 -
Spst3g03981 361 SUPERFAMILY Homeodomain-like 224 284 IPR009057 -
Spst3g03981 361 MobiDBLite consensus disorder prediction 334 361 - -
Spst3g03981 361 Coils Coil 37 57 - -
Spst3g03981 361 Gene3D - 225 283 - -
Spst3g03981 361 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 16 348 IPR044787 GO:0003700|GO:0006355
Spst3g03981 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 223 283 IPR017930 -
Spst3g03981 361 MobiDBLite consensus disorder prediction 129 160 - -
Spst3g03981 361 NCBIfam myb-like DNA-binding domain, SHAQKYF class 226 281 IPR006447 GO:0003677
Spst3g03981 361 MobiDBLite consensus disorder prediction 311 361 - -
Spst3g03981 361 FunFam Myb family transcription factor 225 283 - -
Spst3g03981 361 MobiDBLite consensus disorder prediction 139 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03981 Spst-Chr3 90343061 90345118 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03981 1 282 G2-like Transcription Factor Family AT4G37180 40.138 5.98e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Spst3g03981 Myb_DNA-binding 8.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03981 - - gmx:100794220 448.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03981 3 90343061 90345118 Spst3g03981 3 90343061 90345118 ECH
Spst3g03981 3 90343061 90345118 Spst3g03981 3 90343061 90345118 PCT