Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03971 ATGAGATTTGAGATGGTGGTGAGGGTCAGAGTGGGAGGCAGGGCCCTTGACGGCGACCATAGGTCTCTGTCTGCCTCTCCGGACGGCACGCGCGCTCAGGCTATGCTATTCATTCATTCTGCAATGCATACAGTACAATGGTCGGGTATGTATGAAGTTTCAATATTTGGGGGTGTGATTGTGTACCAGAGACAGGACAGTGGGACATGTGTTTGTTCTGGCCAGGGGAGTGAATCCACCAAGATAAAGAAGATGATCCAAGAACTGTTGGGTGGAGCTAGCCTCATAGCAGGAGAAAGAAAACCCTCCATTAATGGAGGAGGAGGAGGAGTTCTACTCCCAACTACACCATCTCCCTCTTCTCTTCCTTCTTCCACAGCCAATAATGTTACCCTCATATCCACCACCGCAACTACTACTACTGCCACCACCACCACCGCTACTCCCACATCGGAAAACCAAAACCTGAGGTGCCCGCGATGCGATTCATCCAACACCAAGTTCTGCTACTACAACAACTACAACCTCACTCAACCGCGCCACTTCTGCAAGACATGCCGCCGCTACTGGACCAAAGGCGGCGCTCTCCGCAACGTTCCAATCGGCGGCGGCTGCCGGAAAAACAAGAACATCGGCGTGGCGAACTCAGTGTCAAAGACAGCCTCAACCAAGATGAAAACCGTTGCATCTGAGCTTGGAAAATCACCAGGTTTTGGTGGGTTTGAAGTTGAACATGAGCTTCCACAACCGAGCCAAATCCTTTGGGGTTCCCCCCAAAACACTCACCTTCTGGCTTTGCTGAGGGCTACACAAAATCAAAACCCTAACCCTAACCCTAGTCCCATGTCCATCAAGGAAGAAGGGACCCTAATGGGCCACATGGTGAGCACTGAGCCCTTGGTTTCAAATGCGCTGCTGAATCACCGAACCTTGGGCTATGATGCGGTTGCGCAAGTTCCTTCGCTTGGTCTGTTTGGGAGAAGCAACCAAGATCAACAACCAAATGGAGGGTTCCTACTTGGGGAACATCACAACAGCGGAATTCAAGAGCTTTACCAGAAGCTAAGGTCATCAACGGCTAATAATTATTGCAGTGATAACTCGTCACAAGTGTTTATGGGCAACATGGCTTCAAATTATTCCTCTTCTGTGTCGAACAACATTATGGAGACAACTTCTGTCGCTGGGGGTGAATTCGGATACTGGAATGGTTCAACCTTTTCGTGGTCTGATCTTCCAACCACGAATGGCGCTGGTGCTTATCCGTAA 1269 0.5004 MRFEMVVRVRVGGRALDGDHRSLSASPDGTRAQAMLFIHSAMHTVQWSGMYEVSIFGGVIVYQRQDSGTCVCSGQGSESTKIKKMIQELLGGASLIAGERKPSINGGGGGVLLPTTPSPSSLPSSTANNVTLISTTATTTTATTTTATPTSENQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKNIGVANSVSKTASTKMKTVASELGKSPGFGGFEVEHELPQPSQILWGSPQNTHLLALLRATQNQNPNPNPSPMSIKEEGTLMGHMVSTEPLVSNALLNHRTLGYDAVAQVPSLGLFGRSNQDQQPNGGFLLGEHHNSGIQELYQKLRSSTANNYCSDNSSQVFMGNMASNYSSSVSNNIMETTSVAGGEFGYWNGSTFSWSDLPTTNGAGAYP 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03971 422 Pfam Dof domain, zinc finger 154 210 IPR003851 GO:0003677|GO:0006355
Spst3g03971 422 ProSitePatterns Zinc finger Dof-type signature. 158 194 IPR003851 GO:0003677|GO:0006355
Spst3g03971 422 MobiDBLite consensus disorder prediction 106 127 - -
Spst3g03971 422 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 145 356 IPR045174 GO:0003700|GO:0006355
Spst3g03971 422 ProSiteProfiles Zinc finger Dof-type profile. 156 210 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03971 Spst-Chr3 90200754 90206665 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03971 152 258 C2C2-Dof Transcription Factor Family AT1G51700 56.250 1.07e-33 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Spst3g03971 zf-Dof 4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03971 - - gmx:778108 527.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03971 3 90200754 90206665 Spst3g03971 3 90200754 90206665 ECH
Spst3g03971 3 90200754 90206665 Spst3g03971 3 90200754 90206665 PCT