Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03960 ATGCCATCGTCGAACTCCGGCGAGAGCCGCCGAGCCACCAAGCCCCAGAGCGCTGCCGGAGCCCCGCCTCCGCCGGAGCAAGAGAATCTCCCCTGCCCCCGCTGTGAGTCCACCAACACTAAGTTCTGCTACTACAACAACTACAACTACTCCCAGCCGCGCCACTTCTGCAAGTCGTGCCGCCGGTATTGGACCCACGGCGGCACCCTCCGCGACATCCCTGTCGGAGGCGGCAGCCGCAAGAACGCCAAGCGCTCCCGCACCCACCACACTGCCACTTCATCGTCCTCCTCCACCATGACGTCACATCAGGAGCACACTCTACCCGCATTGGCCCCCGTCGCCACAACCCAAGGAGGGTCCATGCACTTCGTTGACGGAGACGTTAATAAACAGAGTAACGTTAACGTCTGCGGGAGTTTCACTTCGTTGCTGAACAACACCCAGGGCAACGGGTTTCTCGCCCTCGGGGGTTTTGGGCTTGGGCTGGGGCACGGGTTGGAGGACATGGGTTTCGGGATTAGCAGGTCGGGGTGGGCCTTCCCCGGTATGGTGGATGGTGCCAACATTGGAGGCGGCGTTCCGTCTTCTGGCATGAGCGCGTGGCAGTTAGAGAGTGGCGAAGGTGGGTTTGTTAGTGGAGACTGTTTCTCATGGCCTGGGCTTGCGATTTCAACACCGGGGAATGGTCTCAAATGA 699 0.608 MPSSNSGESRRATKPQSAAGAPPPPEQENLPCPRCESTNTKFCYYNNYNYSQPRHFCKSCRRYWTHGGTLRDIPVGGGSRKNAKRSRTHHTATSSSSSTMTSHQEHTLPALAPVATTQGGSMHFVDGDVNKQSNVNVCGSFTSLLNNTQGNGFLALGGFGLGLGHGLEDMGFGISRSGWAFPGMVDGANIGGGVPSSGMSAWQLESGEGGFVSGDCFSWPGLAISTPGNGLK 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03960 232 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 152 IPR045174 GO:0003700|GO:0006355
Spst3g03960 232 Pfam Dof domain, zinc finger 28 84 IPR003851 GO:0003677|GO:0006355
Spst3g03960 232 MobiDBLite consensus disorder prediction 71 106 - -
Spst3g03960 232 MobiDBLite consensus disorder prediction 1 32 - -
Spst3g03960 232 ProSitePatterns Zinc finger Dof-type signature. 32 68 IPR003851 GO:0003677|GO:0006355
Spst3g03960 232 ProSiteProfiles Zinc finger Dof-type profile. 30 84 IPR003851 GO:0003677|GO:0006355
Spst3g03960 232 MobiDBLite consensus disorder prediction 89 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03960 Spst-Chr3 90030938 90031636 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03960 1 232 C2C2-Dof Transcription Factor Family AT3G50410 50.198 1.13e-63 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Spst3g03960 zf-Dof 9.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03960 - - gmx:778095 346.665
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03960 3 90030938 90031636 Spst3g03960 3 90030938 90031636 ECH