Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03948 ATGTTTCACCACAGCACAAAGTTCGCTGTGGTTCTCACCATCTTCATGTTCTGTTCAACGATCGCCAAAACCAGCAGCAACTGCACGCGCAGTTGCGGACAACATTCCCTGCAATACCCTTTTGGGTTCTCTTCTGGCTGCGAAGTCAAACTAAACTGCAGCAACAACATCAAAGTCAAAATCGGCGAGTTAGAGGTTCAGAATATAACCTCTGATAGCATATTCGTCAGTCTTCCGCTGAAGTGCAACCGCAGCATGGGAATCATAGACCCTCTTTTCGGTCACAACTTTGCTCCTACGTTAAACAATAGCTTTCTAGTACAGGGTTGCGAGTCCAAGCTGGGTGACTGCGATATTCACCCATCGAGTTTCGTTAGCGATCACAACCTGGTGGAGGGGTGCGACAGCAAAAACAAAAGTGAAGATTTTATTTGCTTCACGCAGTTGCAGCGTAATAGTTCGCGAGAAGATGTGCTCGTGCAGCAAGATTTGGAGGGAATTGGGTGTCGCTTCTTGTTCTCTGCTCTTGCTTATGATAAGAGTAAAGTGAAAGAGCTTTCACTCCAATTACAGTTGCTTGAGTTGGGGTGGTGGCTTAAAGGGCCGTGCCATTGCTCCAACAATGCATCCTGCACGGAGGTCAAGCTTGGGAGAGGAGAACCAGGCTTCCGATGCCACTGCCATGAAGGTTTCGTCGGCGACGGTTTCAAAGACGGCGACGGTTGCCGGAGTACCTTATCAGTTCCTGAATGCAAAGCTTCAACACTATGGTCAGGCGGATGTAGAAAAGCAATCAAAATTGGTGTCCTAGTCGGAGGGGTCATAATTGCGGCTACCCTGGTGGCTGCTCTGTCTCTTCTATGTTACTTTACTAGGCGTCGTTCCTCTTGGCTGAGAAAACAAGCGACAGTAAAGCGCCTATTACGAGAAGCTGCAGGCGACTCTACTGTTCCTCTATATCCCTACAAAGAAATAGAAAGAGCCACAAGTTTTTTCTCTGAAAAACATAGGCTGGGAACTGGGGCTTTTGGCACAGTTTATGCTGGACACCTTCACAATGATGAGTGCGTCGCTATAAAAAAGATTAAGTATAGAGACACCAACAGTGTTGACCAAGTCATGAACGAGATCAAGCTCCTTTCTTCAGTGAGTCACCCAAACTTAGTGCGCCTCCTAGGTTGCTGCATAGAAGGTGGAGAGCAGATACTTGTGTACGAGTTTATGCCCAATGGAACACTATCTCAACATTTGCAAAGAGAGAGGGGTGGAGTACTTACATGGACAATAAGACTCACCATTGCTACCGAAACTGCTAATGCTATAGCGTACCTCCATTCTGCAATTAACCCTCCAATATATCACAGAGACATAAAATCCAGCAATATACTGTTGGACTATAATTTTCAATCAAAAGTGGCAGATTTTGGGCTTTCTAGGCTTGGCATGTCAGAAACATCACATATCTCTACCGCCCCACAAGGGACCCCGGGCTATGTTGATCCCCAATATCACCAGAACTTCCACCTTTCTGATAAAAGTGATGTCTACAGTTTTGGAGTTGTTTTGGTAGAGATAATAACTGCCATGAAAGTGGTTGATTTTTCGAGACCTCGAAGTGAAATCAATTTGGCCGCACTTGCAGTTGAAAGGATTAGGAGAGGTTGTCTTGATGACATCATTGATCCCTTCCTTGATCCACATAGGGATGCTTGGACACTCTATTCTGTTCACAAGGTGGCTGAGCTTGCATTTAGATGCCTTGCTTTTCACAGTGACATGAGGCCTACCATGATTGAAGTGGCTGAGGAGCTAGAACTTATCAGACGAAGTGAGTGGGCAACTATGGAGGAAACCATATGCACAGCTTCATCCGTTGGGTCCGTGTGTTCATCTCCTCGAATAGGAACTGAGAATTCACTAGGAGGTGTTAGTTTTGAGAGAGCTGCAGGGCAAGGGAGTGAGACATTGATTGTTCCACCCAAGACTGAAATGTTTTTGCAATCACTTTCGGAAGTGAAGGACAGCTCTCCTGTATCTGTGCATGATGCTTGGCTAAGTGGAACTAGCTCACCTTCAACAAATAGCTAG 2088 0.4593 MFHHSTKFAVVLTIFMFCSTIAKTSSNCTRSCGQHSLQYPFGFSSGCEVKLNCSNNIKVKIGELEVQNITSDSIFVSLPLKCNRSMGIIDPLFGHNFAPTLNNSFLVQGCESKLGDCDIHPSSFVSDHNLVEGCDSKNKSEDFICFTQLQRNSSREDVLVQQDLEGIGCRFLFSALAYDKSKVKELSLQLQLLELGWWLKGPCHCSNNASCTEVKLGRGEPGFRCHCHEGFVGDGFKDGDGCRSTLSVPECKASTLWSGGCRKAIKIGVLVGGVIIAATLVAALSLLCYFTRRRSSWLRKQATVKRLLREAAGDSTVPLYPYKEIERATSFFSEKHRLGTGAFGTVYAGHLHNDECVAIKKIKYRDTNSVDQVMNEIKLLSSVSHPNLVRLLGCCIEGGEQILVYEFMPNGTLSQHLQRERGGVLTWTIRLTIATETANAIAYLHSAINPPIYHRDIKSSNILLDYNFQSKVADFGLSRLGMSETSHISTAPQGTPGYVDPQYHQNFHLSDKSDVYSFGVVLVEIITAMKVVDFSRPRSEINLAALAVERIRRGCLDDIIDPFLDPHRDAWTLYSVHKVAELAFRCLAFHSDMRPTMIEVAEELELIRRSEWATMEETICTASSVGSVCSSPRIGTENSLGGVSFERAAGQGSETLIVPPKTEMFLQSLSEVKDSSPVSVHDAWLSGTSSPSTNS 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03948 695 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 10 688 IPR044652 GO:0004672
Spst3g03948 695 SMART serkin_6 332 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g03948 695 SUPERFAMILY Protein kinase-like (PK-like) 314 607 IPR011009 -
Spst3g03948 695 ProSiteProfiles Protein kinase domain profile. 332 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g03948 695 Pfam Protein tyrosine and serine/threonine kinase 335 603 IPR001245 GO:0004672|GO:0006468
Spst3g03948 695 FunFam Wall-associated receptor kinase-like 20 408 617 - -
Spst3g03948 695 Gene3D Phosphorylase Kinase; domain 1 293 407 - -
Spst3g03948 695 FunFam Wall-associated receptor kinase-like 14 299 407 - -
Spst3g03948 695 Gene3D Transferase(Phosphotransferase) domain 1 408 626 - -
Spst3g03948 695 CDD STKc_IRAK 338 607 - -
Spst3g03948 695 ProSitePatterns Serine/Threonine protein kinases active-site signature. 452 464 IPR008271 GO:0004672|GO:0006468
Spst3g03948 695 ProSitePatterns Protein kinases ATP-binding region signature. 338 361 IPR017441 GO:0005524
Spst3g03948 695 Gene3D Laminin 199 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03948 Spst-Chr3 89854043 89857744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03948 1 695 Receptor kinase-like Gene Family AT2G23450 54.043 0.0 713
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Spst3g03948 PK_Tyr_Ser-Thr 7.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03948 - - gmx:100810861 1134.4