Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03936 ATGAACAGCAAATCTCTAGCGTTTGTTGCCACAGCCATTTCGACAAGGTTCCGCGTTCCTCTTCCTCAAACTCGATGCCAATTCTACTGTTCTCCACCCTCTCATCCTTCCTGCAACAAGCTCTTTGTTGGAGGGTTGTCATGGTCAGTGGACGAAAAGTCGCTCAAAGACGCTTTCTCTTCCTTCGGAGACGTCACTGAAGTGAGGATAGTGTATGATAAAGATAGTGGCAGGTCTAGAGGCTTTGGATTTGTCATTTTCTCAAATGAAGATGATGCCAAATGTGCAAAGGATGCAATGGATGGAAAGGCACTTTTAGGTAGACCATTGAGGATAAATATTGCTCTTGAGAAGGTCCGAGGTGCACCCGTTGTAGTTCCTCGGCTTTCAGATATTGGACATTTGAGCAAGCGCTAA 417 0.4556 MNSKSLAFVATAISTRFRVPLPQTRCQFYCSPPSHPSCNKLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRSRGFGFVIFSNEDDAKCAKDAMDGKALLGRPLRINIALEKVRGAPVVVPRLSDIGHLSKR 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03936 138 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 117 IPR000504 GO:0003723
Spst3g03936 138 Coils Coil 136 138 - -
Spst3g03936 138 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 111 IPR000504 GO:0003723
Spst3g03936 138 Gene3D - 22 121 IPR012677 -
Spst3g03936 138 CDD RRM2_NsCP33_like 40 115 - -
Spst3g03936 138 SMART rrm1_1 40 113 IPR000504 GO:0003723
Spst3g03936 138 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 26 118 - -
Spst3g03936 138 SUPERFAMILY RNA-binding domain, RBD 22 120 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03936 Spst-Chr3 89676605 89686367 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03936 41 118 C2H2 Transcription Factor Family AT2G19380 38.750 5.50e-13 62.8