Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03932 ATGAGTCACCAAGACCCTCACCAACAGCAGCCACAGCACCAGCAGATTCGGAGGGACAAAGTGAGAGTTCAAGGCTTCGAGCCACAACAAACTTTGGTTCCCATAGAGGAAGACGAATCGGGAAGCCTCCCGGTGTACGAAACCGCGGGCATGTTGTCGGAGATGTTCACTTTCCCTCCCGGCGCCGCCACGGAATTGTTGGAGCAACAACAGCCACAGCAACAACAACAACCAATGACGACGACGTTTCGGTCGGCGAGGGCAGTGGGCAGTGGTGGCAGCGAGTGGTACGGAAACAGACAAGGGATGTTAACTGGGTTGGGACCGTTGGGAGATTCCAAGAATCATCATCATCATGGCAGTGTGAATAGCCGTGACAGTAGCAGCAGCAGCATTCAGCATCAGCATCATCATCATCACCACAACCACCATCATCACCATCAGATGTCGAGTATTAATCCAGACTCTGCAGCTGCCATGCAGCTTTTTCTCATGAACCCGCAAACCACCAGATCCCCTTCTCCCCCTCCTCCTCCTTCTTCCACTCTCCACATGTTACTTCCCACTTTTCCTCCAGGCTCAGGAGGGTCTTTTGGTCAATTCACGTGGCTGCCCGACACTGCTCAAGATGGAGGAGGACCCAGTACTCTAGTGGAAGGCCCTGGTCACGGCCAAAGCCTTTCCTTGTCTTTGTCCTCCTCCTTAGAAGCTGCAAAAGCGGAGGAACTCAGGATGGGGGATAGTGGGTTTTTGTATTACAATCAACCAAGTGGAGGACCCTCTTCCTATAAGAGTGCTCTTGGGGGTCATCACCACCAAGCATTGTTGGGACAGACCCACCAGGCACATGTTGGCTTTGGAGCATCATCGTCCACATCATCCTTAGGTGTTGTCAATGCGTTGAGGAATTCAAAGTATGTCAAGGCTGCTCAGGAATTGCTTGAGGAGTTTTGCAGTGTTGGGAGGGGCCAGTTCAAGAAGAACAAGTTCAATAGGCAACTTTCAAACCCTAGTTCCAATCTTGGAGGCAGTGGTGGCGGCGGCGGTGCTTCCTCGTCTTCAACAAAGGATGTCCCTCCTTTGTCAGCAGCTGATAGGATTGAGCATCAAAGGAGAAAGGTCAAACTTCTAACAATGCTTGACGAGGCATGTAATCTTTCTCTCTCTCTCTCTGGATTCTTCATACCCTCTCTCATTCTTCTAGAGTCAAGAAACCCAAGCACATTCGTCATTCGCATTGACCGTACTGTGGATCGGAGATATAGCCACTACTGCGAGCAAATGCACATGGTGGTGAACTCGTTTGACATGGTGATGGGTTTTGGTGCTGCGGTGCCATACACAGCACTTGCGCAGAAAGCAATGTCTCGTCACTTCAGGTGTCTAAAGGATGCGATAACAGCGCAACTGAAGCATAGTTGTGAGATGTTGGGAGAGAAAGATGGGGCAGGGAACTCAGGGTTGACCAAAGGAGAGACCCCAAGGCTCAAGTTGCTTGAACAAAGTTTGAGACAGCAAAGAGCGTTTCATCAAATGGGGATGATGGAACAGGAAGCTTGGAGACCCCAGAGAGGGTTGCCAGAACGATCTGTCAACATTTTGAGAGCCTGGCTTTTCGAGCATTTCCTTCATCCGTATCCAAGCGATGCAGATAAGCATCTGTTGGCACGACAGACTGGGCTATCGAGAAATCAGGTATCAAACTGGTTCATTAATGCGAGGGTTAGATTGTGGAAACCCATGGTGGAAGACATGTACCAACAAGAACTCAAGGAAGCTGAAGGGGCAGAAGAGGAGAGAGAGAGGAATCAAAGCAGCAGCAACAACAGTGGCCACCAGCTGGCACAAACCCCAACGCCCTCCACCACAGCATCGACAGCAACAGCGCCACCACCGCCACCAACAACATCGACAGCGACGACACCACCAACCGCCAAAAGATCCGACACCGAAAGCGACACTTCACTCGCCCCAATAAATAACAACAGGCCACAGGGAGCCTTCTCGGAAACACAACCTAACTCCGCCACCACCGCCACCGCCTCTGAGGTGGCGCCTCCCTCCGAGCTCTCCCGCTCGATGGTGGCCGACGAATCGTGCCGGCACGGTACCCTTGTTGCGACGGAGTTTGGGACCGGTTCTGGTGCTTCTGACATTGGTTCGACACTGATTAGGTTTGGGACCACCGCTGGTGACGTGTCACTGACACTAGGGCTACGTCACGCCGGGAACATGCCGGAGAAAACTCCGTTCTCCGTTAGGGACTTTGGAGGCATTTAA 2280 0.5206 MSHQDPHQQQPQHQQIRRDKVRVQGFEPQQTLVPIEEDESGSLPVYETAGMLSEMFTFPPGAATELLEQQQPQQQQQPMTTTFRSARAVGSGGSEWYGNRQGMLTGLGPLGDSKNHHHHGSVNSRDSSSSSIQHQHHHHHHNHHHHHQMSSINPDSAAAMQLFLMNPQTTRSPSPPPPPSSTLHMLLPTFPPGSGGSFGQFTWLPDTAQDGGGPSTLVEGPGHGQSLSLSLSSSLEAAKAEELRMGDSGFLYYNQPSGGPSSYKSALGGHHHQALLGQTHQAHVGFGASSSTSSLGVVNALRNSKYVKAAQELLEEFCSVGRGQFKKNKFNRQLSNPSSNLGGSGGGGGASSSSTKDVPPLSAADRIEHQRRKVKLLTMLDEACNLSLSLSGFFIPSLILLESRNPSTFVIRIDRTVDRRYSHYCEQMHMVVNSFDMVMGFGAAVPYTALAQKAMSRHFRCLKDAITAQLKHSCEMLGEKDGAGNSGLTKGETPRLKLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEDMYQQELKEAEGAEEERERNQSSSNNSGHQLAQTPTPSTTASTATAPPPPPTTSTATTPPTAKRSDTESDTSLAPINNNRPQGAFSETQPNSATTATASEVAPPSELSRSMVADESCRHGTLVATEFGTGSGASDIGSTLIRFGTTAGDVSLTLGLRHAGNMPEKTPFSVRDFGGI 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03932 759 Gene3D - 523 585 - -
Spst3g03932 759 SMART prehox3 295 468 IPR006563 -
Spst3g03932 759 Pfam Homeobox KN domain 537 576 IPR008422 GO:0003677|GO:0006355
Spst3g03932 759 SMART HOX_1 520 584 IPR001356 GO:0003677
Spst3g03932 759 MobiDBLite consensus disorder prediction 89 152 - -
Spst3g03932 759 MobiDBLite consensus disorder prediction 167 228 - -
Spst3g03932 759 FunFam BEL1-like homeodomain protein 4 523 585 - -
Spst3g03932 759 MobiDBLite consensus disorder prediction 606 624 - -
Spst3g03932 759 MobiDBLite consensus disorder prediction 331 359 - -
Spst3g03932 759 MobiDBLite consensus disorder prediction 591 605 - -
Spst3g03932 759 ProSiteProfiles 'Homeobox' domain profile. 517 580 IPR001356 GO:0003677
Spst3g03932 759 MobiDBLite consensus disorder prediction 591 694 - -
Spst3g03932 759 MobiDBLite consensus disorder prediction 640 687 - -
Spst3g03932 759 MobiDBLite consensus disorder prediction 170 185 - -
Spst3g03932 759 Coils Coil 583 606 - -
Spst3g03932 759 Pfam Associated with HOX 301 467 IPR006563 -
Spst3g03932 759 CDD homeodomain 520 581 IPR001356 GO:0003677
Spst3g03932 759 MobiDBLite consensus disorder prediction 1 23 - -
Spst3g03932 759 SUPERFAMILY Homeodomain-like 522 587 IPR009057 -
Spst3g03932 759 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 149 607 - -
Spst3g03932 759 MobiDBLite consensus disorder prediction 331 365 - -
Spst3g03932 759 MobiDBLite consensus disorder prediction 625 639 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03932 Spst-Chr3 89606595 89613014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03932 295 759 Homeobox Transcription Factor Family AT2G23760 51.248 7.70e-142 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Spst3g03932 POX 4e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03932 - - gmx:100814959 1044.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03932 3 89606595 89613014 Spst3g03932 3 89606595 89613014 ECH
Spst3g03932 3 89606595 89613014 Spst3g03932 3 89606595 89613014 PCT