Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03930 ATGGTGGGGGCGTTGCTTCAAGGGAAAAAGACAAAAAAGAAAGAGCAAATTCGGTGCTGCAGAACTGAAGTTATTCGAGCGAATTCAATAGGTTTTACCAACTTGCAGCAAATCATATTCATGGGTTGGTTCACTAAATTGCTCAAGGGATCCAACCGTAAATATTCTGGAGGAAGATATCATGGGAAATATGGAGATGACAGATATTCAGACAATCGTGATAATTCAGCGGATGATTTGACAGAAATTGAGAAAGAAGAAATTGATCGGGCAATAGCACTCTCTCTTTCAGAGGCAGACCAGAAAGGGAAAAAAGTTATTGAGGAGGACTCTGAATCTGAAGATGATGAACTGTGTCCACTTGATGATGAGGAGGACAAATGTGTTGAAGTTCAGCAAGATGAAGATGACCATCATGCTAAAATTCAACAGGACGAAGACAAAAATCTTGATGAAGTTCAACTTGAGGAAGATGAACAACTTGCCAGGGCAATTGAAGAAAGTTTGAGCATTAGTTCTCCTCCTCGATCTGACACTGATTCTTTATTTCAACCTTTTGCACACTTATTCCCACCTGTATACAGAATCTGTGCTGGCTGCAATGCCGAGATTGGCAGTGGAAGATTTTTGAGTTGCATGGGGGGTTTTTGGCATCCTGAATGTTTTTGTTGTCAAGCTTGCAAACTTCCAATCACTGATTATGAGTTTTCTATGTCTGGGAATCGCCGTTATCATAAATCCTGCTATAAGGAGTTGCATCATCCGAAATGTGATGTTTGCCATAACTTTATCCCACCAAATTCAGCTGGCCTAATAGAGTATAGAGCACATCCTTTCTGGTTACAAAAATATTGTCCATCGCATGAACGTGACGGTACTCCTCGTTGTTGTAGCTGTCAAAGAATGGAGTCAGTGGATGCTAAATATCTGTTGCTTGATGATGGCCGAAAGCTGTGTCTGGAGTGTCTTGACTCAGCTATCATGGATACTCATGAATGCCAACCTCTCTATGTTGAGATACAAGAATTTTATGAAGGTTTACATATGAAGATAGAGCAGCAAATTCCTATGCTTTTGGTTGAGAGACAAGCACTGAACGAAGCCATGGAGGGAGAGAAGAATGGCCATCACCACTTACCTGAAACTAGAGGACTTTGCTTGTCTGAAGAGCAAACTATTCCCACTATTTTAAGGAGACCAAGGATTGGAGCAGGATACCAGCTCATAGATATGATCACTGAGCCTTTTAGACTGATCCGTCGATGTGAAGTGACAGCCATACTTGTTTTGTATGGCCTACCCAGGTTATTGACTGGATCAATCCTGGCTCACGAAATGATGCATGCGTGGCTTAGACTTAAAGGCTATGGAAATCTGAAGCCAGAAGTTGAAGAGGGAATTTGCCAAGTCTTGGCTCATATGTGGTTAGATTCAGAGATCTATTCCAGCTCTGGGAATGAAGGTGCATCATCGTCATCTTCATCTTCATCTTCATCATCCTCTTCCTCACCTTCATCCTCTTCATCATCTAAGAAGGGTAAACGTTCTGACTTTGAGAAGAAACTTGGTGAATATTTCAAACATCAGATTGAGTCAGATAGCTCATCAGCTTATGGAGATGGATTCAGAGAGGGTAACCAGGCAGTGCTCAAGTATGGGCTTAAAAGGACCCTTGACCATATTCGAATGACTGGAAGTTTTCCATATTGA 1710 0.4158 MVGALLQGKKTKKKEQIRCCRTEVIRANSIGFTNLQQIIFMGWFTKLLKGSNRKYSGGRYHGKYGDDRYSDNRDNSADDLTEIEKEEIDRAIALSLSEADQKGKKVIEEDSESEDDELCPLDDEEDKCVEVQQDEDDHHAKIQQDEDKNLDEVQLEEDEQLARAIEESLSISSPPRSDTDSLFQPFAHLFPPVYRICAGCNAEIGSGRFLSCMGGFWHPECFCCQACKLPITDYEFSMSGNRRYHKSCYKELHHPKCDVCHNFIPPNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCQRMESVDAKYLLLDDGRKLCLECLDSAIMDTHECQPLYVEIQEFYEGLHMKIEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTIPTILRRPRIGAGYQLIDMITEPFRLIRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYGNLKPEVEEGICQVLAHMWLDSEIYSSSGNEGASSSSSSSSSSSSSSPSSSSSSKKGKRSDFEKKLGEYFKHQIESDSSSAYGDGFREGNQAVLKYGLKRTLDHIRMTGSFPY 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03930 569 MobiDBLite consensus disorder prediction 486 516 - -
Spst3g03930 569 MobiDBLite consensus disorder prediction 486 511 - -
Spst3g03930 569 Pfam Protein DA1 346 564 IPR022087 -
Spst3g03930 569 Gene3D Cysteine Rich Protein 193 254 - -
Spst3g03930 569 CDD LIM_DA1 197 249 - -
Spst3g03930 569 MobiDBLite consensus disorder prediction 102 123 - -
Spst3g03930 569 FunFam Protein DA1-related 1 191 250 - -
Spst3g03930 569 ProSiteProfiles LIM domain profile. 195 255 IPR001781 -
Spst3g03930 569 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 224 281 - -
Spst3g03930 569 PANTHER PROTEIN DA1-RELATED 2 43 569 IPR045218 -
Spst3g03930 569 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 156 175 IPR003903 -
Spst3g03930 569 ProSitePatterns LIM zinc-binding domain signature. 197 231 IPR001781 -
Spst3g03930 569 SMART uim 83 102 IPR003903 -
Spst3g03930 569 SMART uim 156 175 IPR003903 -
Spst3g03930 569 SMART lim_4 196 248 IPR001781 -
Spst3g03930 569 Pfam LIM domain 197 251 IPR001781 -
Spst3g03930 569 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 193 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03930 Spst-Chr3 89569209 89574265 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Spst3g03930 DA1-like 2.5e-105 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03930 - - gmx:100813890 960.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03930 3 89569209 89574265 Spst3g03930 3 89569209 89574265 ECH
Spst3g03930 3 89569209 89574265 Spst3g03930 3 89569209 89574265 PCT