Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03919 ATGAAGAGTTGCGTCCACGCAATCGTGTTCATAATTCTGATGATCTCGTATCTTTGGAGTTCTTCAGTTGCATCAATTGAAACAAGTTCTTTAGCATCCAGCGCGCACAGAGGACCCCCGCGCTGTCCATCACAGCTGCAGTCTCTCCCTGGCGGTGATGTTAAGCTTCTCTGTGACACTGTTGTTGAGAGTGTTAGGGAATTGACAGGGTACGATAGGGTTATGGTTTATAAGTTTCACGCGGATGAGCATGGGGAGGTTGTTTATGAGAGCAAGCGGCCTGATTTAGAGCCTTACATTGGTTTGCATTATCCCGCCACTGATATTCCTCATGCTTCTAGGTTTTTTGACGAGGCTCTTGTGCAGCCTCTATGTTTGGTTGGGTCAACGCTCAGGGCCCCCCATGGTTGTCGTGCTCAGTACATGGCTAACATGGGGTCGATTGCATCTTTGGTCATGGATGTTATTATTAATGGGAATGATGGGGAAGGTGTTGGTGGACGGAGTTCCATGAGGCTGTGGGGGCTTGTTGTTTGCCATCACACTTCTGCTAGGTGTATTCCATTTCCCTTGAGGTATGCTTGTGAGTTTCTCATGCAGGCCTTTGGGCTGCAGTTGAACATGGAGCTTCAGTTGGCTGCCCATGCATTGGAGAAACGGGTTTTGAGGACGCAGACTCTGTTGTGTGATATGCTTCTTAGGGACTTGCCTACTGGCATTATTACTCAGAGTCCTAGTATTATGGACTTGGTGAAGAGTGATGGAGCTGCACTTTACTACAAAGGGTAA 789 0.4791 MKSCVHAIVFIILMISYLWSSSVASIETSSLASSAHRGPPRCPSQLQSLPGGDVKLLCDTVVESVRELTGYDRVMVYKFHADEHGEVVYESKRPDLEPYIGLHYPATDIPHASRFFDEALVQPLCLVGSTLRAPHGCRAQYMANMGSIASLVMDVIINGNDGEGVGGRSSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLAAHALEKRVLRTQTLLCDMLLRDLPTGIITQSPSIMDLVKSDGAALYYKG 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03919 262 Gene3D - 215 262 IPR043150 -
Spst3g03919 262 SUPERFAMILY GAF domain-like 193 262 - -
Spst3g03919 262 Pfam GAF domain 53 210 IPR003018 GO:0005515
Spst3g03919 262 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 53 200 IPR016132 -
Spst3g03919 262 FunFam Phytochrome 36 221 - -
Spst3g03919 262 SMART gaf_1 53 220 IPR003018 GO:0005515
Spst3g03919 262 Gene3D - 44 115 IPR029016 -
Spst3g03919 262 Gene3D - 136 214 IPR029016 -
Spst3g03919 262 SUPERFAMILY GAF domain-like 52 207 - -
Spst3g03919 262 Gene3D PAS domain 121 135 - -
Spst3g03919 262 PANTHER TWO-COMPONENT HISTIDINE KINASE 12 260 - -
Spst3g03919 262 PRINTS Phytochrome signature 68 87 IPR001294 GO:0006355|GO:0009584
Spst3g03919 262 PRINTS Phytochrome signature 240 260 IPR001294 GO:0006355|GO:0009584
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03919 Spst-Chr3 89337613 89339968 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03919 41 262 Histidine Kinase Gene Family AT2G18790 75.610 2.06e-124 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03919 K12121 - gmx:100799831 404.831