Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03916 ATGAATCATCGACCTATTGAAGCCCATAGGATGCTCTTCTCTCAGCTATATCCTGGTGCATTCACTGAAGTAACAACTCCTCAACAAGGGGAAGCCAAGCCAAGACGCAAGAGAAACAAAAAGAATAGGGATGGAGAAAATGGAGCTGTGGGCACCACCAAGAAGAGAAAGCTCACTGCTGAGCAGGTTAGTCTTCTTGAGAAAAATTTCAGCAGTGAACAAAAGCTTGAATCTGAAAGGAAGGACCAACTCGCATTTGAGCTTGGTATGGACCCTCGACAAGTTGCGGTATGGTTTCAAAATAGACGTTTTCGTTGGAAGAACAAAAAGTTGGAGGAAGAGTACTCCAATCTTAAGAATGTTCATGAAACCACCGTGCTCCAGAAATGCCACCTTGAGACTCAGGTGTTGAAACTGGAGGAGCAGCTTTTGGAAGCAAAGAAGGAGATGCAGAAGCTAAAGGAGCGTGGTGAAAGAGCTCCAACCAAACACTCACTGGAAGCTGTGAACCCACCATTTCTTGGAGAGTTCAGGGTGGAAGAATGTGATTACGATGATGTTTTTTACGTTCCTGAGTGGATCAATCTCTTCAAGTGA 597 0.4456 MNHRPIEAHRMLFSQLYPGAFTEVTTPQQGEAKPRRKRNKKNRDGENGAVGTTKKRKLTAEQVSLLEKNFSSEQKLESERKDQLAFELGMDPRQVAVWFQNRRFRWKNKKLEEEYSNLKNVHETTVLQKCHLETQVLKLEEQLLEAKKEMQKLKERGERAPTKHSLEAVNPPFLGEFRVEECDYDDVFYVPEWINLFK 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03916 198 FunFam homeobox-leucine zipper protein ATHB-40 48 117 - -
Spst3g03916 198 CDD homeodomain 54 110 IPR001356 GO:0003677
Spst3g03916 198 ProSitePatterns 'Homeobox' domain signature. 84 107 IPR017970 GO:0000981|GO:0006355
Spst3g03916 198 ProSiteProfiles 'Homeobox' domain profile. 49 109 IPR001356 GO:0003677
Spst3g03916 198 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 31 157 IPR045224 GO:0003700
Spst3g03916 198 Pfam Homeodomain 54 108 IPR001356 GO:0003677
Spst3g03916 198 Coils Coil 136 156 - -
Spst3g03916 198 SUPERFAMILY Homeodomain-like 53 117 IPR009057 -
Spst3g03916 198 Coils Coil 101 128 - -
Spst3g03916 198 SMART HOX_1 52 113 IPR001356 GO:0003677
Spst3g03916 198 MobiDBLite consensus disorder prediction 23 56 - -
Spst3g03916 198 Gene3D - 45 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03916 Spst-Chr3 89257017 89258553 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03916 1 197 Homeobox Transcription Factor Family AT4G36740 47.926 2.74e-60 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Spst3g03916 Homeodomain 1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03916 K09338 - gmx:100803948 246.128
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03916 3 89257017 89258553 Spst3g03916 3 89257017 89258553 ECH
Spst3g03916 3 89257017 89258553 Spst3g03916 3 89257017 89258553 PCT