Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03907 ATGACTGTTGATTTGGACAACGTTTCCATGGCTTCAGGGGAAGCAAGCATCTCTTCCTCTGCCAATGAAACAAAACCCGCTCCCAAGAAAAAAAGAAGCCTCCCTGGCATGCCAGATCCTGAGGCAGAGGTGATTGCTTTGTCGCCGAAGACGCTGTTGGCGACGAACCGGTTCGTGTGCGAGATATGCAACAAAGGGTTTCAGAGAGACCAGAATCTGCAGCTTCATCGGCGAGGTCACAACTTGCCGTGGAAGCTGAGGCAGAGGTCTACCAAGGAGGTGAGGAAGAGAGTGTACGTGTGTCCCGAATCCACGTGCGTGCACCACGATCCTTCTAGAGCCTTGGGGGACTTAACGGGGATCAAGAAGCACTTCTGCAGGAAGCACGGTGAGAAGAAGTGGAAATGCGACAAATGTTCCAAGAAATACGCCGTTCAGTCCGATTGGAAGGCGCACTCCAAAGTCTGCGGCACTAGAGAGTATAAGTGCGATTGCGGAACCGTTTTCTCCAGGAGGGATAGCTTCATTACGCATAGAGCATTTTGCGATGCGTTGGCGGAGGAAAGTGCGAGATCTCACACTGTTGTTGCCAAGGCTAATTCGGAGAGTGATTCAAAGGTTTTAACCGACTCGCCGCCGTCTCCGGATGAGGCGGCGGCGGCTACTACCACCACCCCAGCGCCGCCAAATAGCGTCATATCTTCTGGTGTGCTGACGCAGAAAATAGAGTTTCCAGAAAATAATTCCCCACAAGCCATTGAAGAGCCACAAGCTATTACTGCTATTAGTGGTAGCAGCAGTAGCAACTGCTCAACAAGCAATGGTGGTGCTACCGGTAATAGTATTAGCAATAGTAGTGTGTTTGCAAGTTTGTTTGCTTCTTCAACATCATCGGGGACCATACAATCCCAAACACCAGCATTCAGTGACTTAGTTAGAGCCATGGGGCCTCCAGATCACCCTGCAGATATCATAGTTCCCTCTTCATCTGAGGCCGTATCTCTTTGCCTCTCCACCAGTATTGCCACACCAATTTTCGCAACAGGAGGGCAGGAGCACCGGCGGTATGCCTCGACTCCTCAACCGGCCATGTCAGCCACCGCATTGCTGCAGAAAGCTGCTCAAATGGGTTGTGCAGCCACAAATGCCTCTCTGCTGCGCGGGTTTGGCATTGTGTCATCATCTTCAGCTTCAACCTCATCAGGGCAGCAAAATGGTCTGCAAAGGGGTCAGCAGCAGTTAGAATCTGAGAGTGGTTCGGTTCCTTCAGGGCCTGGACTTAGTCTTCCATGTGATGTTGGTTCTGGACTGAAGGAATTGATGATGGGGACACCCTCAATGTTTGGTCCTAGACAAACAACTCTTGATTTTCTAGGATTAGGGATGGCTTCTGGTGGGGGCTTATCTGCACTCATGACATCTATCGGTGGTGGTTTGGATGTTACTGCAGCAGCCGCAACCTTTGGTAATGGAGAATTTTCTGGCAAAGATATTGGAAGGAGAAGCTCTTGA 1512 0.506 MTVDLDNVSMASGEASISSSANETKPAPKKKRSLPGMPDPEAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSTKEVRKRVYVCPESTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKVCGTREYKCDCGTVFSRRDSFITHRAFCDALAEESARSHTVVAKANSESDSKVLTDSPPSPDEAAAATTTTPAPPNSVISSGVLTQKIEFPENNSPQAIEEPQAITAISGSSSSNCSTSNGGATGNSISNSSVFASLFASSTSSGTIQSQTPAFSDLVRAMGPPDHPADIIVPSSSEAVSLCLSTSIATPIFATGGQEHRRYASTPQPAMSATALLQKAAQMGCAATNASLLRGFGIVSSSSASTSSGQQNGLQRGQQQLESESGSVPSGPGLSLPCDVGSGLKELMMGTPSMFGPRQTTLDFLGLGMASGGGLSALMTSIGGGLDVTAAAATFGNGEFSGKDIGRRSS 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03907 503 Gene3D Classic Zinc Finger 38 108 - -
Spst3g03907 503 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 14 466 IPR031140 -
Spst3g03907 503 MobiDBLite consensus disorder prediction 196 233 - -
Spst3g03907 503 FunFam protein indeterminate-domain 12-like 37 105 - -
Spst3g03907 503 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Spst3g03907 503 SUPERFAMILY beta-beta-alpha zinc fingers 57 154 IPR036236 -
Spst3g03907 503 MobiDBLite consensus disorder prediction 1 24 - -
Spst3g03907 503 MobiDBLite consensus disorder prediction 397 428 - -
Spst3g03907 503 MobiDBLite consensus disorder prediction 397 423 - -
Spst3g03907 503 FunFam protein indeterminate-domain 5, chloroplastic-like 112 191 - -
Spst3g03907 503 Pfam Zinc finger, C2H2 type 58 80 IPR013087 -
Spst3g03907 503 Gene3D Classic Zinc Finger 127 194 - -
Spst3g03907 503 SMART c2h2final6 134 154 IPR013087 -
Spst3g03907 503 SMART c2h2final6 99 129 IPR013087 -
Spst3g03907 503 SMART c2h2final6 58 80 IPR013087 -
Spst3g03907 503 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Spst3g03907 503 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03907 Spst-Chr3 89142956 89145240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03907 1 502 IDZ Gene Family AT5G66730 56.772 2.04e-176 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst3g03907 zf-C2H2 0.0051 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03907 K25869 - gmx:100783947 701.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03907 3 89142956 89145240 Spst3g03907 3 89142956 89145240 ECH
Spst3g03907 3 89142956 89145240 Spst3g03907 3 89142956 89145240 PCT