Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03902 ATGGGAGACCTCAACAACGATCCTCTGATGCGCAACCAAAACGCCGCCGTTCAGGCCCGTACCAAGGCCCAGAACCGCGCCAATGTCCTTCAGCTCAAGCTGATTGGACAGAATCACCCAACTGGTCTCACGGCGAATCTATTGAAGCTCTTTGAGCCTAGGCCTCCTTTGGAATATAAACCGCCCCCGGAGAAAAGAAAATGTCCACCGCTTACAGGGATGGCGCAATTTGTGAGCAAGTTTGCTGAGCCTGGTGATCCCGAATACGCTCCGCCTGTACCAAAAACTGAGACTCCTGCACAAAGACGAGCAAGAATACACAAATTAAAACTAGAGAAGGGAGCAGCAATGGCTGCTGAGGAGCTTAAGAAATATGATCCACATAATGATCCAAATATATCAGGAGACCCATACAAGACCTTGTTTGTAGCCAGACTTAGTTATGAGACCACTGAGAGCAGAATCAAAAGGGAGTTTGAATCATATGGTGCAATCAAACGGGTTCGATTGATCACTGACACTGAGACAAATAAGCCCAAAGGTTATGCATTCATTGAGTATCTGCACACAAGAGACATGAAAGCTGCTTATAAACAAGCTGATGGTAGGAAAATTGAGGGTAGAAGGGTGCTTGTGGATGTTGAACGTGGGAGGACAGTTCCAAATTGGCGACCTCGCCGTCTTGGTGGTGGGCTTGGTACTACAAGAGTAGGGGGGGAAGAAGTTAATCAGCGACATTCTGGGAGGGAGCAACAACAGTCTGGTCCTTCTCGTTCTGAAGAACCGAGAACACGGGAGGATCGTCATGGTGAGCGGGACAGAGAAAAGTCACGGGAAAGAGGTAAGGACAGAAATAGAAAACGTGAGCCACGTGAACGCTCTAGTGATAGGGCAAGGGATCGTGATCATAGAGAGGATAGGCACCACAGAGACCGGGAAAGGAATAGGGAAAGAGAGAGAGATCGGGGGCATGATCGAGATAGAGCACGAGGTCGAGACCGTGATCGGGAGAGGGATCGTGATCGGAACCGAGATCACAATCGACTTCATGGAAGAGATAAGGATTATGAATTTGGAGAGACTGATCTGGGACGCACTCGTGATAGAGAGACTGACTATGATCATATATCTAAATATGAGAAAGAACATCATGGTGAAAGAGAGCGTGACTATGAACCTGAGGATGATCGTCGTTGGTACAACCGACCTGGGTATGGACATAGGCATGCAGATCCTGAACACGATCCTGATCACTATGAGCATCATCGAAGGGGACAGGATGATGAGGGAGATGACCATGGTGACTATTACAATCATCATACTGATCATGATAGGATGGAAGATGACTACCACACTGAACGGGCAAAATCTGAATCACGAGATAGGGAGAGAAACCGTGATGTGGACCATGAATATCGTCGCTCCGAGAGGTCTCATTCTAAAGAGTATGATTACTGA 1458 0.4767 MGDLNNDPLMRNQNAAVQARTKAQNRANVLQLKLIGQNHPTGLTANLLKLFEPRPPLEYKPPPEKRKCPPLTGMAQFVSKFAEPGDPEYAPPVPKTETPAQRRARIHKLKLEKGAAMAAEELKKYDPHNDPNISGDPYKTLFVARLSYETTESRIKREFESYGAIKRVRLITDTETNKPKGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVNQRHSGREQQQSGPSRSEEPRTREDRHGERDREKSRERGKDRNRKREPRERSSDRARDRDHREDRHHRDRERNRERERDRGHDRDRARGRDRDRERDRDRNRDHNRLHGRDKDYEFGETDLGRTRDRETDYDHISKYEKEHHGERERDYEPEDDRRWYNRPGYGHRHADPEHDPDHYEHHRRGQDDEGDDHGDYYNHHTDHDRMEDDYHTERAKSESRDRERNRDVDHEYRRSERSHSKEYDY 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03902 485 Gene3D - 126 251 IPR012677 -
Spst3g03902 485 MobiDBLite consensus disorder prediction 259 485 - -
Spst3g03902 485 MobiDBLite consensus disorder prediction 221 485 - -
Spst3g03902 485 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 141 210 IPR000504 GO:0003723
Spst3g03902 485 Pfam U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 42 130 IPR022023 -
Spst3g03902 485 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 139 217 IPR000504 GO:0003723
Spst3g03902 485 SUPERFAMILY RNA-binding domain, RBD 127 239 IPR035979 GO:0003676
Spst3g03902 485 CDD RRM_snRNP70 138 228 IPR034143 GO:0030619
Spst3g03902 485 FunFam U1 small nuclear ribonucleoprotein 70 kDa 126 251 - -
Spst3g03902 485 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 60 293 - -
Spst3g03902 485 SMART rrm1_1 140 213 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03902 Spst-Chr3 89076061 89081580 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03902 141 187 C2H2 Transcription Factor Family AT2G19380 36.170 5.72e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03902 K11093 - gmx:100814484 618.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03902 3 89076061 89081580 Spst3g03902 3 89076061 89081580 ECH