Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03900 ATGTCAGACTCACACCTGACTTTCTGTTTTCTTTCTTCCATCCTTGCTCTTATAGTCATCACCTTCATTTTCACCAAAAGAAAGAAACCAGCCCTTAATCTCCCCCGTGGCCAAATGGGGTGGCCCCTTCTCGGGGAAACCATAGGGTATTTGAAGCCTTACCGAGCTCTTACACTAGGAGAGTTTATGGAGAAGCACATAGCAAGGTATGGTACAATTTACAAGTCGAACTTGTTTGGGGAGCCAGCCATAGTGTCAGCAGATGCGGGGCTTAATAGGTTGATATTGCAGAACGAAGGGAAGTTGTTCGAGACCAATTATCCTAAGAGCCTTGGGGGAATACTTGGGAAATGGTCTATGTTGGTCTTAGTTGGGGACATGCATAGAGACATGAGGAACATATCACTCAACTTTCTCAGCTATACCAGGATCCGAACTCATCTGGTCAAAGACGTCGATAAGCATGCCCTTCTTGTTATTTCCTCGTGGAAACATAATTATACATTCTCAGCTCAAGAAGAAGCTAAAAGGTTTACCTTCAATTTAATGGCGAAACATATCATGAGTTTGGATCCTGAGAATGTCGAGACAGAACAATTGAAGACAGAATATGTCTCTTTCATGAAGGGTGTTGTATCTCCTGCTCCTTTGAATTTGCCAGGAACAGCATACAGGAAAGCATTAAAGTCTAGATCCACCATTCTGAAGTTCATAGAGGCAAAAATGGAAGAGAGGGCCAAGAGGGTTCAAAAGGGGGATTCATTGGAGGAAGAGAATGATCTTCTAAACTGGGTTTTGAGGCATACAAATCTTTCAACTGAACAAATACTTGACTTGATATTAAGCTTGCTCTTTGCTGGCCATGAAACCTCGTCGGTAGCCATAGCTCTAGCTATTTACTTCTTGCCTGGTTGTCCTCGAGCTATGCAACAATTAAGGGAGGAACACGTGGAAATAGTCACTTCCAAGAAGAAGACAGGGGATGTTGAATTGACTTGGGATGATTACAAAAAAATGGAGTTTACTCACTGTGTTTTGAACGAAACACTTCGACTAGGGAATGTTGTGAGGTACCTTCACAGAAAGGCTATTAAGGATGTTCGGTACAAAGGTTATGACATTCCATGTGGGTGGAAAGTTCTTCCGGTGATTTCAGCTGCGCATTTGGATCCTGAACTTTTTGACCAGCCTCACCAATTCAATCCATGGAGATGGCAGGGAAATAGTAAAAGTGAAAATTTCATGCCTTTTGGAGGAGGATCAAGGATGTGTGCAGGATCAGAGTTAGCAAAACTTGAAATGGCTGTGTTCATCCACCATCTGGTCCTCAACTATGACTGGGAAATTCTTGATGGGGATCAACCTTTTGTATACCCTTATGTAGATTTCCCCAAAGGTCTTCCTATCAAAGTTCAAACCCACCCTTCCACATGA 1434 0.4275 MSDSHLTFCFLSSILALIVITFIFTKRKKPALNLPRGQMGWPLLGETIGYLKPYRALTLGEFMEKHIARYGTIYKSNLFGEPAIVSADAGLNRLILQNEGKLFETNYPKSLGGILGKWSMLVLVGDMHRDMRNISLNFLSYTRIRTHLVKDVDKHALLVISSWKHNYTFSAQEEAKRFTFNLMAKHIMSLDPENVETEQLKTEYVSFMKGVVSPAPLNLPGTAYRKALKSRSTILKFIEAKMEERAKRVQKGDSLEEENDLLNWVLRHTNLSTEQILDLILSLLFAGHETSSVAIALAIYFLPGCPRAMQQLREEHVEIVTSKKKTGDVELTWDDYKKMEFTHCVLNETLRLGNVVRYLHRKAIKDVRYKGYDIPCGWKVLPVISAAHLDPELFDQPHQFNPWRWQGNSKSENFMPFGGGSRMCAGSELAKLEMAVFIHHLVLNYDWEILDGDQPFVYPYVDFPKGLPIKVQTHPST 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03900 477 CDD CYP90-like 66 471 - -
Spst3g03900 477 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 417 426 IPR017972 GO:0005506|GO:0016705
Spst3g03900 477 Gene3D Cytochrome P450 24 473 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst3g03900 477 PRINTS P450 superfamily signature 424 435 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst3g03900 477 PRINTS P450 superfamily signature 344 355 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst3g03900 477 PRINTS P450 superfamily signature 286 303 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst3g03900 477 PRINTS P450 superfamily signature 415 424 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst3g03900 477 Pfam Cytochrome P450 35 455 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst3g03900 477 PRINTS E-class P450 group I signature 424 447 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst3g03900 477 PRINTS E-class P450 group I signature 295 321 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst3g03900 477 PRINTS E-class P450 group I signature 275 292 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst3g03900 477 PRINTS E-class P450 group I signature 383 407 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst3g03900 477 PRINTS E-class P450 group I signature 414 424 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst3g03900 477 PRINTS E-class P450 group I signature 67 86 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst3g03900 477 SUPERFAMILY Cytochrome P450 32 461 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Spst3g03900 477 PANTHER CYTOCHROME P450 26 31 455 - -
Spst3g03900 477 FunFam Cytochrome P450 90B1 24 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03900 Spst-Chr3 89045548 89049501 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03900 26 410 Cytochrome P450 AT3G50660 69.458 0.0 590
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03900 K09587 - gmx:100800210 787.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03900 3 89045548 89049501 Spst3g03900 3 89045548 89049501 ECH
Spst3g03900 3 89045548 89049501 Spst3g03900 3 89045548 89049501 PCT