Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03892 ATGTTTTTGAATCTTTTGATCGAATGGGGTCGATACTCCAGAGGAGGGTGTGTTGGGTTTGGCCATGATGAAGCTACGGCTACTAATACTGTTGCCCCATCAGCAACTGCTCCTAAAAAGCAATGTTGGTGTGATGGGGTTTGGATTCGGGGCATGAGAGTGTTAGGGAAGAGAAAGGAGCGTGAGGAGTGGGAAGGTAGCTACACTCTACGCTACACTACTATTCCATTTTCCTTGGGGGATGGCAGTGGCAGAGATACGGATACAGACAGAGGTTTTGATGTATTGGGTTTGCGACTAATAAAGCCTCGTGATCGGAGAAGGCAGATCCGTGGAAGAATACTGTTTCCACTAGGACCAGTCCAATTAATATCGGCCAAGGCAATGATGCATCGCTGTTGCGGGAACTCTCAGGCTCACGTGATGGGCACGTGCACATGCGCCATGTTTCACAGCGAAACTAACTCCTACTCGATGCTCTTTTCTATGCCTATGCCCAACACCCACGGTCCCTATGATGATTACGAACACGACATGTATTCCTCCTACACGCCCTCTCCTTCTTCCGTGGACTGCACGCTCTCCCTTGGTACCCCCTCCACGCGTTTCACCGAAGACGAGGAGAGACGAAGCCGCCACGAACGTCGCTCTTCCGTCTCCAACTTTTGCTGGGACTTGCTGCAATCCAAACACACCACCCAATCTCAAACCAATAAATCCAGTAGGGGAAGCAATGCCACTTCCAACAACGACCCTCTTCTCGCTCGTCGCTGCGCCAACTGCGACACTACTTCCACTCCCCTCTGGAGAAACGGCCCTCGCGGCCCGAAGTCACTATGCAATGCTTGCGGGATCAGATATAAGAAGGAAGAAAGAAGAGCGACCGCTGCCGCCGCCACGTCAGCGGCTGCTCCCGGCGGCGTAATAGAATCGGCGCGCACGTACGGCCACCAAAGCAATTCTTGGTACGCACACTCGCAGATGGGTAACGAGTTACGCTTCATGGAGGATTCCGATGATAGAGACTCGGAGAATGGCATTCCGTTCTTCTCTTGGAACCTTAACGTTCCAGACCGAACGAGCCTCGTGCACGACTACACGAGATGA 1107 0.5248 MFLNLLIEWGRYSRGGCVGFGHDEATATNTVAPSATAPKKQCWCDGVWIRGMRVLGKRKEREEWEGSYTLRYTTIPFSLGDGSGRDTDTDRGFDVLGLRLIKPRDRRRQIRGRILFPLGPVQLISAKAMMHRCCGNSQAHVMGTCTCAMFHSETNSYSMLFSMPMPNTHGPYDDYEHDMYSSYTPSPSSVDCTLSLGTPSTRFTEDEERRSRHERRSSVSNFCWDLLQSKHTTQSQTNKSSRGSNATSNNDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEERRATAAAATSAAAPGGVIESARTYGHQSNSWYAHSQMGNELRFMEDSDDRDSENGIPFFSWNLNVPDRTSLVHDYTR 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03892 368 PANTHER GATA TRANSCRIPTION FACTOR 18 139 368 IPR044272 GO:0003700|GO:0009908
Spst3g03892 368 MobiDBLite consensus disorder prediction 187 214 - -
Spst3g03892 368 ProSitePatterns GATA-type zinc finger domain. 258 283 IPR000679 GO:0006355|GO:0043565
Spst3g03892 368 Pfam GATA zinc finger 258 292 IPR000679 GO:0006355|GO:0043565
Spst3g03892 368 SMART GATA_3 252 306 IPR000679 GO:0006355|GO:0043565
Spst3g03892 368 CDD ZnF_GATA 257 289 IPR000679 GO:0006355|GO:0043565
Spst3g03892 368 MobiDBLite consensus disorder prediction 187 201 - -
Spst3g03892 368 Gene3D - 254 305 IPR013088 GO:0006355|GO:0008270
Spst3g03892 368 ProSiteProfiles GATA-type zinc finger domain profile. 252 288 IPR000679 GO:0006355|GO:0043565
Spst3g03892 368 MobiDBLite consensus disorder prediction 233 252 - -
Spst3g03892 368 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 255 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03892 Spst-Chr3 88926600 88930085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03892 134 368 C2C2-Gata Transcription Factor Family AT3G50870 42.014 7.83e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Spst3g03892 GATA 1.2e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03892 - - gsj:114390318 323.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03892 3 88926600 88930085 Spst3g03892 3 88926600 88930085 ECH
Spst3g03892 3 88926600 88930085 Spst3g03892 3 88926600 88930085 PCT