Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03887 ATGCAAGGCTTTGGTTACGCGAAAATTCCTGGTAAAATCTCTCTAGCATTGCCCTTTTACGCTATGTATGGAGCACACATTCAAAATTTGATTCGACGAGGGTTTGGCTTAGGGTGTTCTCTCTCTCCTCAAGCTTTTGCTGGTGCAATTAAGCTTTCTGCACTTCAGAATCTTAAGTCTTATTTAGCTTCCAAGTCAGATTTGATGGATATGAGTGAGCAAGATAAGGTAATAGAGATGCCTAGCACTTTGGGTTATAACCTCCCCAGTAGAAATTCATCTTCTTCTAAGATATCCTCACCAATAGGGGAAAGAAGTAACCAACCTCCTCAATCTCACACATTGGTTTTCAGTGATCCACCCCAAACAACTTCACATCATCACCAACATCTCAACCCCCATAATTCACTTCCACAAAATCCACTTCAACTTTCACACCCTCACAGACCCAGAAGAGATCCAGATCCAAGTCCTATCTCTCCTCCTATCATAAGTACCCCAAGAACACAACCACACTCGATAGGAACTTTCACAACAACATTCAGATATGGAGAATGTCTGAAGAATCATGCTGCAAGCATGGGGGGGCATGTCACAGATGGTTGTGGAGAGTTCATGCCAAATGGAGTAGAGGGTACCCCAGAATCCTTCAAGTGTGCAGCTTGTGAGTGCCACCGCAATTTCCACAGAAAAGAACCTGAAGGCGAGTCATCACATGTTCTCAACTACTACCTCACTTACCCCAACAAAACCAATAGAAACATTGTTATTCATTCTCCACAATCTCATCTTCAGTTTCCTACACACCACCATCATGGGATGATGGCCACCCCTTCAGGTGGGCCGGTTCAGCCCGCGATGTTGGGCTTTGGGGGAGGCCTAGCTGAGTCTTCAAGTGAAGATCTCAACATGTTTCAGACAGATGATGGAGGGCAATTGTTATCAGTGCAGCCACCACTGTCATCATCCAAGAAGCGGTTCAGGACCAAGTTCTCACAGCAACAAAAGGATAAGATGATGGAGTTTGCTGAGAAACTGGGGTGGAAGATCCAGAAACAAGATGAACAGGAACTGCATCAATTTTGCTCTCAGGTTGGTGTAAAAAGACAGGTTTTCAAGGTTTGGATGCACAACAGCAAGCAAGCCATGAAAAAGAAGCAAATGTAA 1167 0.4439 MQGFGYAKIPGKISLALPFYAMYGAHIQNLIRRGFGLGCSLSPQAFAGAIKLSALQNLKSYLASKSDLMDMSEQDKVIEMPSTLGYNLPSRNSSSSKISSPIGERSNQPPQSHTLVFSDPPQTTSHHHQHLNPHNSLPQNPLQLSHPHRPRRDPDPSPISPPIISTPRTQPHSIGTFTTTFRYGECLKNHAASMGGHVTDGCGEFMPNGVEGTPESFKCAACECHRNFHRKEPEGESSHVLNYYLTYPNKTNRNIVIHSPQSHLQFPTHHHHGMMATPSGGPVQPAMLGFGGGLAESSSEDLNMFQTDDGGQLLSVQPPLSSSKKRFRTKFSQQQKDKMMEFAEKLGWKIQKQDEQELHQFCSQVGVKRQVFKVWMHNSKQAMKKKQM 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03887 388 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 183 232 IPR006456 -
Spst3g03887 388 MobiDBLite consensus disorder prediction 85 143 - -
Spst3g03887 388 Gene3D - 315 385 - -
Spst3g03887 388 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 152 381 - -
Spst3g03887 388 FunFam Zinc-finger homeodomain protein 2 315 385 - -
Spst3g03887 388 Pfam ZF-HD protein dimerisation region 181 233 IPR006456 -
Spst3g03887 388 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 182 232 IPR006456 -
Spst3g03887 388 NCBIfam homeobox domain, ZF-HD class 324 381 IPR006455 -
Spst3g03887 388 SUPERFAMILY Homeodomain-like 318 385 IPR009057 -
Spst3g03887 388 MobiDBLite consensus disorder prediction 83 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03887 Spst-Chr3 88881849 88883816 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03887 109 388 ZF-HD Transcription Factor Family AT2G18350 42.857 6.88e-62 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Spst3g03887 ZF-HD_dimer 6.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03887 - - ccaj:109810490 467.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03887 3 88881849 88883816 Spst3g03887 3 88881849 88883816 ECH
Spst3g03887 3 88881849 88883816 Spst3g03887 3 88881849 88883816 PCT