Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03883 ATGGGAACTGATGGCAGTGGAGTGGTAGAGACATTGCCAAATCCTTGCTCCTTTAAGGTACATCGTGCAATGTGCACGGAACTGAGGAAATTAGTTGCTAGAGTCTTGCGGATAATTCCACGTATAGAAGAAGCACGCCCTTGCGGAATGCAGGCTCTGTGTTTGCTCAACATTGCAATTGATACAGCCGCACAACTCCTGCTGTACTGCTCCGAATCTAGTAAACTCTACCTGGCATTGACAGGGGATTCCATACTCTCGAAATGCAAGAAGGCGAGAAAATCAATAGTAAAAAACTTAGTCCAGATTCTGAATATGGTTCCGGTGATGTTGGCTGCAGAGATTTCGGGACTAATTGGTGATCTCGAGTGTGTTACATTTGTCCTTGACTCAGCTGAAGAAGCAGCTGGGAAGGTTGTGAACCAATTGCTCCAGCAAGATTCTTCAACATCGGATAAAGATTCATCGGAAGCGTCTGAAATAAAACATTTCCAGTTTGTAGCAGCAAGACTTGGTATTACATCCCAATCGGCCATCTTAATGGAGAAACGATCTATTCAAAAGTTGCTAAAAAAAGTCAAACCTGATGAACAGACAAAAAATATTGTCTTGAACAATCTTTTGTTTCTCCTGCTAAAGTACACAAAATCAATCACGGGAGAAGAAATGGTGGCCTATTCTCAAAGTGAAGGACCAATCGCAACTGCGAACTCAGTTCATGAGTCTCAAAGAATCCATCATGTCAGGTCAGACCAATACTTGAATCATGATCAGTATAGAACTCATGCCAATGACTTGGGCAGACTTACACCTCCTGAGGAATATACATGCCCAATATCTTTAAGGTTGATGTATGACCCTGTTGTCATTGCATCAGGGGAAACATATGAAAGGATGTGGATACAAAAGTGGTTTGATGAGGGTAATATTGTATGCCCAAAAACTAAAAAGAAACTGGATCATATGGCACTGACTCCAAATGTTGCCTTCAGGGACCTAATATTAAAGTGGTGTGAAACTAATGGAGTCTCCATTCCTGACCCGAGTAAACAAGTGCAATATTTGCACTCATGGGAATCTTCCTCCAATTCCATTAGGAGTTTTGGAAGTTCTTTGTATGATTTAAACTTCCAAATGGATCTTAGTAACATGTCAGTTGGATCGTTAGAGACCAGTTATAATTCAGATTCCTCCCATTCTAATGTCAATAATGGATTAAATTTGATAGTGAACAAGACCAGTGACAATTCACAAAGGCATCAATCTCGTGCACAGATTCATGACATTGATCTCATGCATTTGTCTAAACTCCACGAACGTCAATGGGAATCTCAATGCCAACTGATTGAAGATATGAGAATAGATTTCAAATGCAATAACCATGCTTTTTGCTCTGTGCCATCTGAGAATTTCGTTGACCCACTCACGAGATTTCTGAGCACTGCATGTGAGAGGCATGATGTAAAAGCTCTGAGATCTGGAACTAAATTGCTATTAGAATTTATGAAGTGCTGCAGAAATGGTATGACCAATTTAAGAGAAGATACATGCATTATGTTGGCAAGTCTTCTTAACACAGAAGTGATTGGTGAAGCTCTTACTATAATGGAAGAATTGACAGGAAATTGGTATGAGAAAGCTAACATTGCAGCTTCCACTGTACTCGCCTCTGTTTTAAACATCCTTGATTTGGGTAACGAAGAGTTCCAACGAAAAGCTATTAAAATAATGCATAATTTTTCATCCAATAGTCAAATTTGTCCCTACATGGTATCTCTAGGGTGCATCCCAAAATTACTGCCATTTTTTGAGGACAAAACCCTTTTGAGAGACTGTATACATATTTTGAAAAACCTTTGTGATACTGAAGAGGGCAGGGTTACTGTGGTTGAAACAAAAGGATGCATATTTTCTGTTGTTGAAATACTTGGGACTGGCAGTGATGAGGAAAAAGAACCCGCCCTCGTTATTCTACTCGCTTTATGTTCTCAACGTGTGGAATACTGTCAGTTGGTTATGGATGAGGGGATTATTCCTTCTCTTGTCAACATCTCCAATTCAGGAAGTGATATGGCAAAGGCTTATGCTTTTGAACTACTCCGTCTTTTGAAGGAAGATAGAGAGTTTGAGAATGAAGACTATTATGAGGCAAATCCCAATGCCTCTCAAGAATCTACCAATCGCTGTCAAGAAAAGAAATCATCAAAGAAGCCTTCAATTTTGAAGAGATTGACAGCCTTCTCAAAATCCAGTTCAGTTTCACCCAAAAAAAGAGATGAAAAATGA 2286 0.3968 MGTDGSGVVETLPNPCSFKVHRAMCTELRKLVARVLRIIPRIEEARPCGMQALCLLNIAIDTAAQLLLYCSESSKLYLALTGDSILSKCKKARKSIVKNLVQILNMVPVMLAAEISGLIGDLECVTFVLDSAEEAAGKVVNQLLQQDSSTSDKDSSEASEIKHFQFVAARLGITSQSAILMEKRSIQKLLKKVKPDEQTKNIVLNNLLFLLLKYTKSITGEEMVAYSQSEGPIATANSVHESQRIHHVRSDQYLNHDQYRTHANDLGRLTPPEEYTCPISLRLMYDPVVIASGETYERMWIQKWFDEGNIVCPKTKKKLDHMALTPNVAFRDLILKWCETNGVSIPDPSKQVQYLHSWESSSNSIRSFGSSLYDLNFQMDLSNMSVGSLETSYNSDSSHSNVNNGLNLIVNKTSDNSQRHQSRAQIHDIDLMHLSKLHERQWESQCQLIEDMRIDFKCNNHAFCSVPSENFVDPLTRFLSTACERHDVKALRSGTKLLLEFMKCCRNGMTNLREDTCIMLASLLNTEVIGEALTIMEELTGNWYEKANIAASTVLASVLNILDLGNEEFQRKAIKIMHNFSSNSQICPYMVSLGCIPKLLPFFEDKTLLRDCIHILKNLCDTEEGRVTVVETKGCIFSVVEILGTGSDEEKEPALVILLALCSQRVEYCQLVMDEGIIPSLVNISNSGSDMAKAYAFELLRLLKEDREFENEDYYEANPNASQESTNRCQEKKSSKKPSILKRLTAFSKSSSVSPKKRDEK 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03883 761 SUPERFAMILY ARM repeat 437 706 IPR016024 -
Spst3g03883 761 MobiDBLite consensus disorder prediction 713 739 - -
Spst3g03883 761 Gene3D - 431 718 IPR011989 -
Spst3g03883 761 SMART arm_5 665 705 IPR000225 GO:0005515
Spst3g03883 761 SMART arm_5 583 621 IPR000225 GO:0005515
Spst3g03883 761 SMART arm_5 622 663 IPR000225 GO:0005515
Spst3g03883 761 SMART Ubox_2 274 337 IPR003613 GO:0004842|GO:0016567
Spst3g03883 761 Pfam Armadillo-like 520 621 IPR006911 -
Spst3g03883 761 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 345 IPR013083 -
Spst3g03883 761 PANTHER U BOX DOMAIN-CONTAINING 23 707 - -
Spst3g03883 761 Pfam U-box domain 272 341 IPR003613 GO:0004842|GO:0016567
Spst3g03883 761 ProSiteProfiles U-box domain profile. 270 344 IPR003613 GO:0004842|GO:0016567
Spst3g03883 761 CDD RING-Ubox_PUB 272 321 IPR045210 -
Spst3g03883 761 SUPERFAMILY RING/U-box 266 347 - -
Spst3g03883 761 FunFam RING-type E3 ubiquitin transferase 270 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03883 Spst-Chr3 88837820 88841373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03883 15 721 U-box Gene Family AT4G36550 35.873 1.53e-130 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03883 - - gmx:100798951 1204.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03883 3 88837820 88841373 Spst3g03883 3 88837820 88841373 ECH
Spst3g03883 3 88837820 88841373 Spst3g03883 3 88837820 88841373 PCT