Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03876 ATGGTCTCAGTGTTGCGCGGCAGGTCGCGCAGCGGACGGACCTCGCCTTTGTCGGGGCGGCCAGCGAGGAAGATACTGGCTCAGTACAGTGCATATGCTGAGATTCTGGCTGAGTTTGAGCAGTCTGGTGTGTCTGGCAAATCATTTGACTACTCAAGGATGGTCCTTGATCCTCCTAGGATCATTGGGTACAGTGAGAATTGTTTTCAATTGTTGGGTTTGGAGAGGCAAATTGACTCCACGCAGTTCATGGGTTTGATTGGGGTTGATGCAACAACCCTTTTCACTCCCTCTTCTGGGGCTTCCTTAGAAAAAGTTGTGGCTTCCAGGGAAATTTCGCTTCTGAACCCAATTTGGGTCTATGCAAGGACAACTCAGAAGCCATTTTATGCCATACTGCATAGGATTGATGTTGGAGTTGTGATTGATTTGGAGCCGAGACACACGGACTTGAAATTTGAGACGGTGAGGGGAACGAGGTTCCCGAAGAGGCCCAAGACAGATGACTACCCAAGATGCAGGAAACTTTACAGTGCAAGACCAATGAGAGAATGA 555 0.4901 MVSVLRGRSRSGRTSPLSGRPARKILAQYSAYAEILAEFEQSGVSGKSFDYSRMVLDPPRIIGYSENCFQLLGLERQIDSTQFMGLIGVDATTLFTPSSGASLEKVVASREISLLNPIWVYARTTQKPFYAILHRIDVGVVIDLEPRHTDLKFETVRGTRFPKRPKTDDYPRCRKLYSARPMRE 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03876 184 Gene3D PAS domain 54 164 - -
Spst3g03876 184 Pfam PAS fold 60 146 IPR013654 GO:0006355
Spst3g03876 184 SUPERFAMILY PYP-like sensor domain (PAS domain) 59 148 IPR035965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03876 Spst-Chr3 88801385 88803720 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03876 8 146 Histidine Kinase Gene Family AT4G18130 42.778 3.73e-36 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03876 K12123 - gmx:100808192 209.534