Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03858 ATGGAGTTTGCTAGTTTCCATCTTCAGCATCAGCTTCAAGAAGAATCTGCTCAGTGTATAACTTCAGCAAACCCACCACCTGACTCTAAACTTTCCATTACCACTAATCAATCATGGATCCCAAGCAACATATACAATGGTTGTAACAGTGGCTTTCTAACTGAGAGTTTTACAAATTCAAGAGAACAGCACAAGCACGCCATGACCGATTCACTTAGAATTTCAACAAGGCAAGCCTTTGGTTTTCACAATGGAAAAAACCTCACTCAACAGCCAGTTAGTGATCTCTTTCCGGCAAGAATTAAAGGTGAAATGATCAACAACTCCATGAAGGCTATGGAGGAATCATGTTCACTAATCCCAATTCATGAACCACGATATCCTCCTAGTTTCTTATCTAGTCTTGGTCTAACTGGTCAAGAGTTTTCCCCTTCGGAGAATGTCTTTCATAATGACAAGCCTATTGATGGAGGGACCCTAAGCAAGCGATATAACAACTTTGGCGATGTTTGCTTAATTTCGAATACACCAACCCTAGATATGACCTCTTCCTTGGTTTCATGTTCTTTGGGTTTAAATCCTAAAATATTTGACCTGCACACAAGTTATAGCGAGAGTTGTGAATCCCAACCTTGCTCTGATACTTTGGGTCTTAACGAGAGCATAGCTTTGAGCCACAGCGACATACATGACCGCGAAAATAGTCCATCAAATAGCTCAAATAAAATTTCCTCATTTATAAATGAAGTTGCAACGGCGAAAAGGCCTAGCAATTGCTCTCTAGCAAAAGAATCTGAGGCAAAAGCTAAGAAGTCAAAGCCATCGTCATGCCCTCCCCTGAAGGTAAGAAAGGAAAAATTGGGGGATAGGATTCAAACTCTTCAAAGATTAGTCGCACCTTTTGGGAAGACCAGTACAGCCTCTGTCTTAAGTGAAGCCATTGGCTACATCCATTTCCTTCACCAACAAATCCAGACTTTGAGCATTCCTTACATGAAATCCACGCAAAGCAATAGAATGGTGCAGCTGGATACAAATAAATTAAATAGCAGAGAACTGAAGCCAGACCTTAGAAGCAGAGGCTTGTGTCTTGTGCCACTTTCTTACGCATCATTTATTCATCGTTGTGTTTAG 1134 0.4092 MEFASFHLQHQLQEESAQCITSANPPPDSKLSITTNQSWIPSNIYNGCNSGFLTESFTNSREQHKHAMTDSLRISTRQAFGFHNGKNLTQQPVSDLFPARIKGEMINNSMKAMEESCSLIPIHEPRYPPSFLSSLGLTGQEFSPSENVFHNDKPIDGGTLSKRYNNFGDVCLISNTPTLDMTSSLVSCSLGLNPKIFDLHTSYSESCESQPCSDTLGLNESIALSHSDIHDRENSPSNSSNKISSFINEVATAKRPSNCSLAKESEAKAKKSKPSSCPPLKVRKEKLGDRIQTLQRLVAPFGKTSTASVLSEAIGYIHFLHQQIQTLSIPYMKSTQSNRMVQLDTNKLNSRELKPDLRSRGLCLVPLSYASFIHRCV 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03858 377 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 271 320 IPR011598 GO:0046983
Spst3g03858 377 CDD bHLH_AtbHLH_like 281 328 IPR045239 -
Spst3g03858 377 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 281 334 IPR036638 GO:0046983
Spst3g03858 377 Gene3D - 281 346 IPR036638 GO:0046983
Spst3g03858 377 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 135 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03858 Spst-Chr3 88658426 88661467 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03858 237 372 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 50.694 1.64e-32 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03858 - - vum:124832810 622.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03858 3 88658426 88661467 Spst3g03858 3 88658426 88661467 ECH