Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03847 ATGTCAGCCGGAGCGCCCAAACACGATCAATGGCAGTGGGAGAATGCCACCGCTGGCGCCGCCGCCGGAATCGCCACAGTCACCGTCATGTATCCCCTCGATGTTGTCCGCACTAGGTTTCAAGTTAACGATGGTCGAGTCTCTCATCTTCCCCGTTACAAGAATACCACTCACGCCGTTTTCACTATTGCTCGCTCCGAGGGATTAAGAGGGTTATATGCAGGCTTTCTTCCTGGGGCTCTCGGGTCCACTATTTCATGGGGTTTATATTTCTTTTTCTATGATAAAGCCAAACAAAGATATGCAAGGAACAGGGAGGGGAAGTTGAGCCCAGGTCTTCATCTTGCCTCAGCTGCTGAAGCAGGAGGTTTGGTTTGCTTATGCACAAATCCTGTTTGGCTAGTAAAGACAAGATTGCAGCTTCAAACTTCGCTTCATCAGACACGACCATACTCTGGGCTTTATGTTCCCAATGGAACCAATAGTAGAGAGTATAACACCATATCGAGGGAGGAAGGATTTAGTGCACTTTACAGAGACATTGTTCCAGATGCATTTAGGACCATTTTGAGGGAAGAAGGATTTAGGGCGCTTTACAGAGGGATTGTTCCTGGTCTATTTCTGCAGGTCTCTCATGGTGCTATTCAGTTCACAGCATATGAGGAGCTACGTAAAGTTATTGTTGATTTTAAAAGTAAGAGAAGTACAGAACACAATCAAAGTCCTGATACATTGTTGAATTCTGTTGATTATGCGGTTCTTGGAGCAACATCAAAACTAGCTGCCATACTGCTAACTTATCCATTTCAGGTTATGCGGTCTCGCTTGCAGCAACGACCTGGTGGTGATGGCGTTCCAAGATATATGGACACTTGGCATGTTGTGAAAGAAACTGCACGTTTTGAAGGCGTCCGAGGTTTTTACAAAGGAATTACTGCAAACCTCTTGAAGAATGCTCCTGCTTCTTCAATAACATTTATTGTTTATGAAAATGTTATAAAATTGCTTAAACCGACTAGAAGGAATGACTGA 1032 0.4448 MSAGAPKHDQWQWENATAGAAAGIATVTVMYPLDVVRTRFQVNDGRVSHLPRYKNTTHAVFTIARSEGLRGLYAGFLPGALGSTISWGLYFFFYDKAKQRYARNREGKLSPGLHLASAAEAGGLVCLCTNPVWLVKTRLQLQTSLHQTRPYSGLYVPNGTNSREYNTISREEGFSALYRDIVPDAFRTILREEGFRALYRGIVPGLFLQVSHGAIQFTAYEELRKVIVDFKSKRSTEHNQSPDTLLNSVDYAVLGATSKLAAILLTYPFQVMRSRLQQRPGGDGVPRYMDTWHVVKETARFEGVRGFYKGITANLLKNAPASSITFIVYENVIKLLKPTRRND 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03847 343 FunFam Folate transporter 1, chloroplastic 182 341 - -
Spst3g03847 343 Pfam Mitochondrial carrier protein 109 228 IPR018108 -
Spst3g03847 343 Pfam Mitochondrial carrier protein 11 104 IPR018108 -
Spst3g03847 343 Pfam Mitochondrial carrier protein 249 337 IPR018108 -
Spst3g03847 343 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 12 338 IPR044712 GO:0006862|GO:0055085
Spst3g03847 343 ProSiteProfiles Solute carrier (Solcar) repeat profile. 109 226 IPR018108 -
Spst3g03847 343 Gene3D Mitochondrial carrier domain 2 184 IPR023395 -
Spst3g03847 343 Gene3D Mitochondrial carrier domain 185 342 IPR023395 -
Spst3g03847 343 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 100 IPR018108 -
Spst3g03847 343 FunFam folate transporter 1, chloroplastic isoform X1 1 105 - -
Spst3g03847 343 ProSiteProfiles Solute carrier (Solcar) repeat profile. 246 335 IPR018108 -
Spst3g03847 343 SUPERFAMILY Mitochondrial carrier 13 331 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03847 Spst-Chr3 88513475 88521702 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03847 1 336 Chloroplast and Mitochondria Gene Families AT2G47490 36.047 1.91e-43 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03847 K15115 - gmx:100809599 530.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03847 3 88513475 88521702 Spst3g03847 3 88513475 88521702 ECH